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- SASDAK6: Glucose Isomerase (Xylose isomerase) -

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Open data


ID or keywords:

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Basic information

Entry
Database: SASBDB / ID: SASDAK6
SampleGlucose IsomeraseXylose isomerase
  • Xylose isomerase (protein), Streptomyces rubiginosus
Function / homology
Function and homology information


xylose isomerase / D-xylose metabolic process / xylose isomerase activity / magnesium ion binding / identical protein binding / cytoplasm
Similarity search - Function
Xylose isomerase, actinobacteria / Xylose isomerase / Xylose isomerase family profile. / Xylose isomerase-like, TIM barrel domain / Xylose isomerase-like TIM barrel / Xylose isomerase-like superfamily
Similarity search - Domain/homology
Biological speciesStreptomyces rubiginosus (bacteria)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #193
Type: dummy / Software: DAMMIF / Radius of dummy atoms: 1.90 A / Symmetry: p222 / Chi-square value: 2.157961
Search similar-shape structures of this assembly by Omokage search (details)
Model #194
Type: atomic / Software: CRYSOL / Chi-square value: 2.047761
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Glucose IsomeraseXylose isomerase / Dry vol: 209 / Specimen concentration: 1.20-12.83
BufferName: PBS / pH: 7.4 / Composition: Glycerol 50.000 % , NaCl 0.076 M
Entity #128Type: protein / Description: Xylose isomerase / Formula weight: 43.23 / Num. of mol.: 4 / Source: Streptomyces rubiginosus / References: UniProt: P24300
Sequence: MNYQPTPEDR FTFGLWTVGW QGRDPFGDAT RRALDPVESV RRLAELGAHG VTFHDDDLIP FGSSDSEREE HVKRFRQALD DTGMKVPMAT TNLFTHPVFK DGGFTANDRD VRRYALRKTI RNIDLAVELG AETYVAWGGR EGAESGGAKD VRDALDRMKE AFDLLGEYVT ...Sequence:
MNYQPTPEDR FTFGLWTVGW QGRDPFGDAT RRALDPVESV RRLAELGAHG VTFHDDDLIP FGSSDSEREE HVKRFRQALD DTGMKVPMAT TNLFTHPVFK DGGFTANDRD VRRYALRKTI RNIDLAVELG AETYVAWGGR EGAESGGAKD VRDALDRMKE AFDLLGEYVT SQGYDIRFAI EPKPNEPRGD ILLPTVGHAL AFIERLERPE LYGVNPEVGH EQMAGLNFPH GIAQALWAGK LFHIDLNGQN GIKYDQDLRF GAGDLRAAFW LVDLLESAGY SGPRHFDFKP PRTEDFDGVW ASAAGCMRNY LILKERAAAF RADPEVQEAL RASRLDELAR PTAADGLQAL LDDRSAFEEF DVDAAAARGM AFERLDQLAM DHLLGARG

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Experimental information

BeamInstrument name: DORIS III X33 / City: Hamburg / 国: Germany / Shape: 0.6 / Type of source: X-ray synchrotronSynchrotron / Wavelength: 0.15 Å / Dist. spec. to detc.: 2.7 mm
DetectorName: Pilatus 1M-W / Pixsize x: 0.172 mm
Scan
Measurement date: Apr 24, 2012 / Exposure time: 15 sec. / Number of frames: 8 / Unit: 1/nm /
MinMax
Q0.0871 6.0173
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 1171 /
MinMax
Q0.166412 3.36798
P(R) point1 1171
R0 9.74
Result
Type of curve: extrapolated / Standard: BSA
ExperimentalStandardPorod
MW184.02 kDa184.02 kDa141.1 kDa
Volume--293.1 nm3

P(R)Guinier
Forward scattering, I0162.5 165.24
Radius of gyration, Rg3.288 nm3.4 nm

MinMax
D-9.74
Guinier point30 109

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