+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDCN5 |
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Sample | Vaccinia virus DNA polymerase
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Function / homology | Function and homology information viral DNA genome replication / Hydrolases; Acting on ester bonds; Exodeoxyribonucleases producing 5'-phosphomonoesters / nucleotide-excision repair, DNA gap filling / 3'-5'-DNA exonuclease activity / DNA replication proofreading / SOS response / base-excision repair, gap-filling / DNA recombination / DNA-directed DNA polymerase / DNA-directed DNA polymerase activity ...viral DNA genome replication / Hydrolases; Acting on ester bonds; Exodeoxyribonucleases producing 5'-phosphomonoesters / nucleotide-excision repair, DNA gap filling / 3'-5'-DNA exonuclease activity / DNA replication proofreading / SOS response / base-excision repair, gap-filling / DNA recombination / DNA-directed DNA polymerase / DNA-directed DNA polymerase activity / nucleotide binding / DNA binding Similarity search - Function |
Biological species | Vaccinia virus (strain Copenhagen) |
Citation | Date: 2017 Dec Title: The vaccinia virus DNA polymerase structure provides insights into the mode of processivity factor binding Authors: Tarbouriech N / Ducournau C / Hutin S / Mas P / Man P / Forest E / Hart D / Peyrefitte C / Burmeister W |
Contact author |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Data source
SASBDB page | SASDCN5 |
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-Related structure data
Related structure data | C: citing same article (ref.) |
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Similar structure data |
-External links
Related items in Molecule of the Month |
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-Models
Model #1358 | Type: atomic / Software: (1.6) / Radius of dummy atoms: 1.70 A / Symmetry: none / Comment: Calculated scattering curve of protein / Chi-square value: 0.569 Search similar-shape structures of this assembly by Omokage search (details) |
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-Sample
Sample | Name: Vaccinia virus DNA polymerase |
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Buffer | Name: 20 mM Tris HCl, 100 mM NaCl, 4 mM DTT / pH: 7 |
Entity #729 | Name: E9 / Type: protein / Description: DNA polymerase E9 / Formula weight: 117.242 / Num. of mol.: 1 / Source: Vaccinia virus (strain Copenhagen) / References: UniProt: P20509 Sequence: GAMDPDVRCI NWFESHGENR FLYLKSRCRN GETVFIRFPH YFYYVVTDEI YQSLSPPPFN ARPLGKMRTI DIDETISYNL DIKDRKCSVA DMWLIEEPKK RSIQNATMDE FLNISWFYIS NGISPDGCYS LDEQYLTKIN NGCYHCDDPR NCFAKKIPRF DIPRSYLFLD ...Sequence: GAMDPDVRCI NWFESHGENR FLYLKSRCRN GETVFIRFPH YFYYVVTDEI YQSLSPPPFN ARPLGKMRTI DIDETISYNL DIKDRKCSVA DMWLIEEPKK RSIQNATMDE FLNISWFYIS NGISPDGCYS LDEQYLTKIN NGCYHCDDPR NCFAKKIPRF DIPRSYLFLD IECHFDKKFP SVFINPISHT SYCYIDLSGK RLLFTLINEE MLTEQEIQEA VDRGCLRIQS LMEMDYEREL VLCSEIVLLR IAKQLLELTF DYVVTFNGHN FDLRYITNRL ELLTGEKIIF RSPDKKEAVH LCIYERNQSS HKGVGGMANT TFHVNNNNGT IFFDLYSFIQ KSEKLDSYKL DSISKNAFSC MGKVLNRGVR EMTFIGDDTT DAKGKAAAFA KVLTTGNYVT VDEDIICKVI RKDIWENGFK VVLLCPTLPN DTYKLSFGKD DVDLAQMYKD YNLNIALDMA RYCIHDACLC QYLWEYYGVE TKTDAGASTY VLPQSMVFEY RASTVIKGPL LKLLLETKTI LVRSETKQKF PYEGGKVFAP KQKMFSNNVL IFDYNSLYPN VCIFGNLSPE TLVGVVVSTN RLEEEINNQL LLQKYPPPRY ITVHCEPRLP NLISEIAIFD RSIEGTIPRL LRTFLAERAR YKKMLKQATS STEKAIYDSM QYTYKIVANS VYGLMGFRNS ALYSYASAKS CTSIGRRMIL YLESVLNGAE LSNGMLRFAN PLSNPFYMDD RDINPIVKTS LPIDYRFRFR SVYGDTDSVF TEIDSQDVDK SIEIAKELER LINNRVLFNN FKIEFEAVYK NLIMQSKKKY TTMKYSASSN SKSVPERINK GTSETRRDVS KFHKNMIKTY KTRLSEMLSE GRMNSNQVCI DILRSLETDL RSEFDSRSSP LELFMLSRMH HSNYKSADNP NMYLVTEYNK NNPETIELGE RYYFAYICPA NVPWTKKLVN IKTYETIIDR SFKLGSDQRI FYEVYFKRLT SEIVNLLDNK VLCISFFERM FGSKPTFYEA |
-Experimental information
Beam | Instrument name: ESRF BM29 / City: Grenoble / 国: France / Type of source: X-ray synchrotron / Wavelength: 0.0992 Å / Dist. spec. to detc.: 2.864 mm | |||||||||||||||||||||||||||||||||
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Detector | Name: Pilatus 1M | |||||||||||||||||||||||||||||||||
Scan | Title: Vaccinia virus DNA polymerase / Measurement date: Nov 27, 2014 / Storage temperature: 4 °C / Cell temperature: 20 °C / Exposure time: 1 sec. / Number of frames: 900 / Unit: 1/nm /
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Distance distribution function P(R) | Sofotware P(R): GNOM 5.0 / Number of points: 459 /
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Result | Type of curve: other /
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