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- SASDCP5: Vaccinia virus DNA polymerase processivity factor component A20 (... -

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Basic information

Entry
Database: SASBDB / ID: SASDCP5
SampleVaccinia virus DNA polymerase processivity factor component A20 (C-terminal fragment)
  • DNA polymerase processivity factor component A20 C-ter fragment (protein), A20 C-ter, Vaccinia virus (strain Copenhagen)
Function / homologyChordopoxvirus A20R / Chordopoxvirus A20R protein / viral DNA genome replication / DNA replication / DNA polymerase processivity factor component OPG148
Function and homology information
Biological speciesVaccinia virus (strain Copenhagen)
CitationDate: 2017 Dec
Title: The vaccinia virus DNA polymerase structure provides insights into the mode of processivity factor binding
Authors: Tarbouriech N / Ducournau C / Hutin S / Mas P / Man P / Forest E / Hart D / Peyrefitte C / Burmeister W
Contact author
  • Wim Burmeister (IBS, Institut de Biologie Structurale, Grenoble, France)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Models

Model #1360
Type: dummy / Software: (2.7) / Radius of dummy atoms: 1.60 A / Symmetry: none / Comment: best model of 40 / Chi-square value: 0.254 / P-value: 0.000148
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Vaccinia virus DNA polymerase processivity factor component A20 (C-terminal fragment)
BufferName: 25 mM Tris-HCl, 300 mM NaCl / pH: 7.5
Entity #728Name: A20 C-ter / Type: protein
Description: DNA polymerase processivity factor component A20 C-ter fragment
Formula weight: 16.65 / Num. of mol.: 1 / Source: Vaccinia virus (strain Copenhagen) / References: UniProt: P20995
Sequence:
GNGKYFSKVG SAGLKQLTNK LDINECATVD ELVDEINKSG TVKRKIKNQS AFDLSRECLG YPEADFITLV NNMRFKIENC KVVNFNIENT NCLNNPSIET IYRNFNQFVS IFNVVTDVKK RLFENASGNG SGGGLNDIFE AQKIEWHE

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Experimental information

BeamInstrument name: ESRF BM29 / City: Grenoble / 国: France / Type of source: X-ray synchrotron / Wavelength: 0.0931 Å / Dist. spec. to detc.: 2.34 mm
DetectorName: Pilatus 1M
Scan
Title: DNA polymerase processivity factor component A20 (C-terminal fragment)
Measurement date: Feb 5, 2016 / Storage temperature: 4 °C / Cell temperature: 20 °C / Exposure time: 1 sec. / Number of frames: 3000 / Unit: 1/nm /
MinMax
Q0.0329 4.9448
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 639 /
MinMax
Q0.131862 3.13933
P(R) point1 639
R0 7.4
Result
Type of curve: other /
ExperimentalPorod
MW19 kDa19 kDa
Volume-31 nm3

P(R)P(R) errorGuinierGuinier error
Forward scattering, I05.58 0.01 5.59 0.01
Radius of gyration, Rg2.15 nm0.01 2.15 nm0.01

MinMax
D-7.4
Guinier point18 88

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