+データを開く
-基本情報
登録情報 | データベース: SASBDB / ID: SASDCK2 |
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試料 | Glucose Isomerase - Streptomyces rubiginosus
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機能・相同性 | 機能・相同性情報 xylose isomerase / D-xylose metabolic process / xylose isomerase activity / magnesium ion binding / identical protein binding / cytoplasm 類似検索 - 分子機能 |
生物種 | Streptomyces rubiginosus (バクテリア) |
引用 | ジャーナル: Acta Crystallogr D Struct Biol / 年: 2017 タイトル: 2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update. 著者: Jill Trewhella / Anthony P Duff / Dominique Durand / Frank Gabel / J Mitchell Guss / Wayne A Hendrickson / Greg L Hura / David A Jacques / Nigel M Kirby / Ann H Kwan / Javier Pérez / Lois ...著者: Jill Trewhella / Anthony P Duff / Dominique Durand / Frank Gabel / J Mitchell Guss / Wayne A Hendrickson / Greg L Hura / David A Jacques / Nigel M Kirby / Ann H Kwan / Javier Pérez / Lois Pollack / Timothy M Ryan / Andrej Sali / Dina Schneidman-Duhovny / Torsten Schwede / Dmitri I Svergun / Masaaki Sugiyama / John A Tainer / Patrice Vachette / John Westbrook / Andrew E Whitten / 要旨: In 2012, preliminary guidelines were published addressing sample quality, data acquisition and reduction, presentation of scattering data and validation, and modelling for biomolecular small-angle ...In 2012, preliminary guidelines were published addressing sample quality, data acquisition and reduction, presentation of scattering data and validation, and modelling for biomolecular small-angle scattering (SAS) experiments. Biomolecular SAS has since continued to grow and authors have increasingly adopted the preliminary guidelines. In parallel, integrative/hybrid determination of biomolecular structures is a rapidly growing field that is expanding the scope of structural biology. For SAS to contribute maximally to this field, it is essential to ensure open access to the information required for evaluation of the quality of SAS samples and data, as well as the validity of SAS-based structural models. To this end, the preliminary guidelines for data presentation in a publication are reviewed and updated, and the deposition of data and associated models in a public archive is recommended. These guidelines and recommendations have been prepared in consultation with the members of the International Union of Crystallography (IUCr) Small-Angle Scattering and Journals Commissions, the Worldwide Protein Data Bank (wwPDB) Small-Angle Scattering Validation Task Force and additional experts in the field. |
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-構造の表示
構造ビューア | 分子: MolmilJmol/JSmol |
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-ダウンロードとリンク
-モデル
モデル #1173 | タイプ: dummy / ソフトウェア: (on-line) / ダミー原子の半径: 2.40 A / 対称性: P1 / コメント: job submitted ATSAS on-line April 9, 2017 / カイ2乗値: 0.951 / P-value: 0.035000 Omokage検索でこの集合体の類似形状データを探す (詳細) |
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モデル #1174 | タイプ: atomic / ソフトウェア: (on-line) / ダミー原子の半径: 1.90 A コメント: GI tetramer generated from PDB:1OAD using symmetry transforms in pymol カイ2乗値: 1.01580033274 / P-value: 0.045511 Omokage検索でこの集合体の類似形状データを探す (詳細) |
-試料
試料 | 名称: Glucose Isomerase - Streptomyces rubiginosus / 試料濃度: 0.06-0.34 |
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バッファ | 名称: 25 mM MOPS, 250 mM NaCl, 50 mM KCl, 2 mM TCEP, 0.1% NaN3 pH: 7.5 コメント: 2 mM TCEP and 0.1% (.01538 M) NaN3 used for radiation protection |
要素 #612 | 名称: Glucose Isomerase / タイプ: protein / 記述: Xylose isomerase / 分子量: 43.097 / 分子数: 4 / 由来: Streptomyces rubiginosus / 参照: UniProt: P24300 配列: NYQPTPEDRF TFGLWTVGWE GRDPFGDATR RALDPVESVR RLAELGAHGV TFHDDDLIPF GSSDSEREEH VKRFRQALDD TGMKVPMATT NLFTHPVFKD GGFTANDRDV RRYALRKTIR NIDLAVELGA ETYVAWGGRE GAESGGAKDV RDALDRMKEA FDLLGEYVTS ...配列: NYQPTPEDRF TFGLWTVGWE GRDPFGDATR RALDPVESVR RLAELGAHGV TFHDDDLIPF GSSDSEREEH VKRFRQALDD TGMKVPMATT NLFTHPVFKD GGFTANDRDV RRYALRKTIR NIDLAVELGA ETYVAWGGRE GAESGGAKDV RDALDRMKEA FDLLGEYVTS QGYDIRFAIE PKPNEPRGDI LLPTVGHALA FIERLERPEL YGVNPEVGHE QMAGLNFPHG IAQALWAGKL FHIDLNGQNG IKYDQDLRFG AGDLRAAFWL VDLLESAGYS GPRHFDFKPP RTEDFDGVWA SAAGCMRNYL ILKERAAAFR ADPEVQEALR ASRLDELARP TAADGLQALL DDRSAFEEFD VDAAAARGMA FERLDQLAMD HLLGARG |
-実験情報
ビーム | 設備名称: Australian Synchrotron SAXS/WAXS / 地域: Melbourne / 国: Australia / 形状: Point / 線源: X-ray synchrotron / 波長: 0.10332 Å / スペクトロメータ・検出器間距離: 2.683 mm | ||||||||||||||||||||||||||||||||||||
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検出器 | 名称: Pilatus 1M / タイプ: Dectris / Pixsize x: 172 mm | ||||||||||||||||||||||||||||||||||||
スキャン | タイトル: Glucose Isomerase - Streptomyces rubiginosus / 測定日: 2017年3月9日 / セル温度: 22 °C / 照射時間: 1 sec. / フレーム数: 24 / 単位: 1/A /
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距離分布関数 P(R) | ソフトウェア P(R): GNOM 5.0 / ポイント数: 304 /
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結果 | カーブのタイプ: other
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