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- SASDB49: Single stranded poly-deoxythymidine DNA (30mer, dT30) in 200 mM NaCl -

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Basic information

Entry
Database: SASBDB / ID: SASDB49
SampleSingle stranded poly-deoxythymidine DNA (30mer, dT30) in 200 mM NaCl
  • Poly-deoxythymidine (30mer) (DNA), dT30
CitationDate: 2017 Feb 25
Title: The impact of base stacking on the conformations and electrostatics of single-stranded DNA
Authors: Plumridge A / Meisburger S / Andresen K
Contact author
  • Alex Plumridge (Cornell University, Ithaca, NY, United States)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Models

Model #1073
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 1 / Chi-square value: 0.992016
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Model #1074
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 2 / Chi-square value: 0.992016
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Model #1075
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 3 / Chi-square value: 0.992016
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Model #1076
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 4 / Chi-square value: 0.992016
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Model #1077
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 5 / Chi-square value: 0.992016
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Model #1078
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 6 / Chi-square value: 0.992016
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Model #1079
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 7 / Chi-square value: 0.992016
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Model #1080
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 8 / Chi-square value: 0.992016
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Model #1081
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 9 / Chi-square value: 0.992016
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Model #1082
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 10 / Chi-square value: 0.992016
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Model #1083
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 11 / Chi-square value: 0.992016
Model #1084
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 12 / Chi-square value: 0.992016
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Model #1085
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 13 / Chi-square value: 0.992016
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Model #1086
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 14 / Chi-square value: 0.992016
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Model #1087
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 15 / Chi-square value: 0.992016
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Model #1088
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 16 / Chi-square value: 0.992016
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Model #1089
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 17 / Chi-square value: 0.992016
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Model #1090
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 18 / Chi-square value: 0.992016
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Model #1091
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 19 / Chi-square value: 0.992016
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Model #1092
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 20 / Chi-square value: 0.992016
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Sample

SampleName: Single stranded poly-deoxythymidine DNA (30mer, dT30) in 200 mM NaCl
Specimen concentration: 0.50-1.80
BufferName: 1mM Na MOPS, 200mM NaCl / pH: 7
Entity #399Name: dT30 / Type: DNA / Description: Poly-deoxythymidine (30mer) / Formula weight: 9.064 / Num. of mol.: 1
Sequence:
TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT

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Experimental information

BeamInstrument name: Cornell High Energy Synchrotron Source (CHESS) G1
City: Ithaca, NY / 国: USA / Type of source: X-ray synchrotron / Wavelength: 0.1 Å / Dist. spec. to detc.: 1.8 mm
DetectorName: Finger Lakes CCD / Type: CCD
Scan
Title: Single stranded poly-deoxythymidine DNA (30mer, dT / Measurement date: Apr 1, 2015 / Storage temperature: 4 °C / Cell temperature: 22 °C / Exposure time: 10 sec. / Number of frames: 20 / Unit: 1/A /
MinMax
Q0.01 0.29
ResultExperimental MW: 9.4 kDa / Type of curve: extrapolated
GuinierGuinier error
Forward scattering, I053.03 0.57
Radius of gyration, Rg2.72 nm0.05

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