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Yorodumi- PDB-9spu: Echovirus 18 particle missing one pentamer in situ, symmetrized r... -
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Open data
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Basic information
| Entry | Database: PDB / ID: 9spu | |||||||||||||||||||||||||||
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| Title | Echovirus 18 particle missing one pentamer in situ, symmetrized reconstruction (C5) | |||||||||||||||||||||||||||
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Keywords | VIRUS / in situ structure | |||||||||||||||||||||||||||
| Function / homology | Function and homology informationsymbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of RIG-I activity / picornain 2A / symbiont-mediated suppression of host mRNA export from nucleus / symbiont genome entry into host cell via pore formation in plasma membrane / picornain 3C / T=pseudo3 icosahedral viral capsid / host cell cytoplasmic vesicle membrane / ribonucleoside triphosphate phosphatase activity / nucleoside-triphosphate phosphatase / channel activity ...symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of RIG-I activity / picornain 2A / symbiont-mediated suppression of host mRNA export from nucleus / symbiont genome entry into host cell via pore formation in plasma membrane / picornain 3C / T=pseudo3 icosahedral viral capsid / host cell cytoplasmic vesicle membrane / ribonucleoside triphosphate phosphatase activity / nucleoside-triphosphate phosphatase / channel activity / monoatomic ion transmembrane transport / DNA replication / RNA helicase activity / endocytosis involved in viral entry into host cell / symbiont-mediated activation of host autophagy / RNA-directed RNA polymerase / cysteine-type endopeptidase activity / viral RNA genome replication / RNA-directed RNA polymerase activity / DNA-templated transcription / virion attachment to host cell / host cell nucleus / structural molecule activity / proteolysis / RNA binding / zinc ion binding / ATP binding Similarity search - Function | |||||||||||||||||||||||||||
| Biological species | Echovirus E18 | |||||||||||||||||||||||||||
| Method | ELECTRON MICROSCOPY / single particle reconstruction / cryo EM / Resolution: 6.5 Å | |||||||||||||||||||||||||||
Authors | Mukhamedova, L. / Plevka, P. | |||||||||||||||||||||||||||
| Funding support | European Union, 1items
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Citation | Journal: To Be PublishedTitle: Particles of echovirus 18 open to release their genomes in situ Authors: Mukhamedova, L. / Plevka, P. / Trebichalska, Z. / Novacek, J. / Buchta, D. / Levdansky, Y. / Moravcova, J. / Hrebik, D. / Fuzik, T. / Tollefsrud, T.G. / Andersen, J.T. | |||||||||||||||||||||||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 9spu.cif.gz | 1.5 MB | Display | PDBx/mmCIF format |
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| PDB format | pdb9spu.ent.gz | 1 MB | Display | PDB format |
| PDBx/mmJSON format | 9spu.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/sp/9spu ftp://data.pdbj.org/pub/pdb/validation_reports/sp/9spu | HTTPS FTP |
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-Related structure data
| Related structure data | ![]() 55096MC C: citing same article ( M: map data used to model this data |
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| Similar structure data | Similarity search - Function & homology F&H Search |
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Links
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Assembly
| Deposited unit | ![]()
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| 1 | x 5![]()
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| Noncrystallographic symmetry (NCS) | NCS domain:
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Echovirus E18
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