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- PDB-8owt: SARS-CoV-2 spike RBD with A8 and H3 nanobodies bound -

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Basic information

Entry
Database: PDB / ID: 8owt
TitleSARS-CoV-2 spike RBD with A8 and H3 nanobodies bound
Components
  • Nanobody A8
  • Nanobody H3
  • Spike protein S1
KeywordsVIRAL PROTEIN / Nanobody / Complex / Receptor binding domain / SARS-CoV-2
Function / homology
Function and homology information


Maturation of spike protein / viral translation / Translation of Structural Proteins / Virion Assembly and Release / host cell surface / host extracellular space / suppression by virus of host tetherin activity / Induction of Cell-Cell Fusion / structural constituent of virion / entry receptor-mediated virion attachment to host cell ...Maturation of spike protein / viral translation / Translation of Structural Proteins / Virion Assembly and Release / host cell surface / host extracellular space / suppression by virus of host tetherin activity / Induction of Cell-Cell Fusion / structural constituent of virion / entry receptor-mediated virion attachment to host cell / host cell endoplasmic reticulum-Golgi intermediate compartment membrane / receptor-mediated endocytosis of virus by host cell / Attachment and Entry / membrane fusion / positive regulation of viral entry into host cell / receptor-mediated virion attachment to host cell / receptor ligand activity / host cell surface receptor binding / fusion of virus membrane with host plasma membrane / fusion of virus membrane with host endosome membrane / viral envelope / virion attachment to host cell / SARS-CoV-2 activates/modulates innate and adaptive immune responses / host cell plasma membrane / virion membrane / membrane / identical protein binding / plasma membrane
Similarity search - Function
Spike (S) protein S1 subunit, receptor-binding domain, SARS-CoV-2 / Spike (S) protein S1 subunit, N-terminal domain, SARS-CoV-like / Betacoronavirus spike (S) glycoprotein S1 subunit N-terminal (NTD) domain profile. / Spike glycoprotein, N-terminal domain superfamily / Betacoronavirus spike (S) glycoprotein S1 subunit C-terminal (CTD) domain profile. / Spike glycoprotein, betacoronavirus / Spike (S) protein S1 subunit, receptor-binding domain, betacoronavirus / Spike S1 subunit, receptor binding domain superfamily, betacoronavirus / Betacoronavirus spike glycoprotein S1, receptor binding / Spike glycoprotein S1, N-terminal domain, betacoronavirus-like ...Spike (S) protein S1 subunit, receptor-binding domain, SARS-CoV-2 / Spike (S) protein S1 subunit, N-terminal domain, SARS-CoV-like / Betacoronavirus spike (S) glycoprotein S1 subunit N-terminal (NTD) domain profile. / Spike glycoprotein, N-terminal domain superfamily / Betacoronavirus spike (S) glycoprotein S1 subunit C-terminal (CTD) domain profile. / Spike glycoprotein, betacoronavirus / Spike (S) protein S1 subunit, receptor-binding domain, betacoronavirus / Spike S1 subunit, receptor binding domain superfamily, betacoronavirus / Betacoronavirus spike glycoprotein S1, receptor binding / Spike glycoprotein S1, N-terminal domain, betacoronavirus-like / Betacoronavirus-like spike glycoprotein S1, N-terminal / Spike glycoprotein S2, coronavirus, heptad repeat 1 / Spike glycoprotein S2, coronavirus, heptad repeat 2 / Coronavirus spike (S) glycoprotein S2 subunit heptad repeat 2 (HR2) region profile. / Coronavirus spike (S) glycoprotein S2 subunit heptad repeat 1 (HR1) region profile. / Spike glycoprotein S2 superfamily, coronavirus / Spike glycoprotein S2, coronavirus / Coronavirus spike glycoprotein S2 / Coronavirus spike glycoprotein S1, C-terminal / Coronavirus spike glycoprotein S1, C-terminal
Similarity search - Domain/homology
Biological speciesLama glama (llama)
Severe acute respiratory syndrome coronavirus 2
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.37 Å
AuthorsMikolajek, H. / Naismith, J.H. / Owens, R.J.
Funding support United Kingdom, 1items
OrganizationGrant numberCountry
Wellcome Trust223733/Z/21/Z United Kingdom
CitationJournal: To Be Published
Title: Trimeric nanobodies potently neutralize Omicron variants of SARS-CoV-2
Authors: Cornish, K.A.S. / Mikolajek, H. / Naismith, J.H. / Owens, R.J.
History
DepositionApr 28, 2023Deposition site: PDBE / Processing site: PDBE
Revision 1.0May 8, 2024Provider: repository / Type: Initial release

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Assembly

Deposited unit
AAA: Nanobody A8
BBB: Spike protein S1
CCC: Nanobody H3
DDD: Nanobody A8
EEE: Spike protein S1
FFF: Nanobody H3
hetero molecules


Theoretical massNumber of molelcules
Total (without water)107,3039
Polymers106,6656
Non-polymers6383
Water3,099172
1


  • Idetical with deposited unit
  • defined by author&software
  • Evidence: gel filtration
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area7520 Å2
ΔGint-8 kcal/mol
Surface area40400 Å2
MethodPISA
Unit cell
Length a, b, c (Å)90.609, 97.197, 117.583
Angle α, β, γ (deg.)90.000, 90.000, 90.000
Int Tables number19
Space group name H-MP212121
Noncrystallographic symmetry (NCS)NCS domain:
IDEns-IDDetails
11AAA
21DDD
32BBB
42EEE
53CCC
63FFF

NCS domain segments:
Dom-IDComponent-IDEns-IDBeg auth comp-IDBeg label comp-IDEnd auth comp-IDEnd label comp-IDAuth asym-IDLabel asym-IDAuth seq-IDLabel seq-ID
111GLNGLNVALVALAAAA3 - 1251 - 123
211GLNGLNVALVALDDDD3 - 1251 - 123
322ASNASNLYSLYSBBBB334 - 5285 - 199
422ASNASNLYSLYSEEEE334 - 5285 - 199
533VALVALVALVALCCCC4 - 1274 - 127
633VALVALVALVALFFFF4 - 1274 - 127

NCS ensembles :
IDDetails
1Local NCS retraints between domains: 1 2
2Local NCS retraints between domains: 3 4
3Local NCS retraints between domains: 5 6

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Components

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Antibody , 2 types, 4 molecules AAADDDCCCFFF

#1: Antibody Nanobody A8


Mass: 14481.021 Da / Num. of mol.: 2
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Lama glama (llama) / Production host: Escherichia coli (E. coli)
#3: Antibody Nanobody H3


Mass: 15134.849 Da / Num. of mol.: 2
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Lama glama (llama) / Production host: Escherichia coli (E. coli)

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Protein / Sugars , 2 types, 4 molecules BBBEEE

#2: Protein Spike protein S1


Mass: 23716.580 Da / Num. of mol.: 2
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Severe acute respiratory syndrome coronavirus 2
Gene: S, 2 / Production host: Homo sapiens (human) / References: UniProt: P0DTC2
#4: Sugar ChemComp-NAG / 2-acetamido-2-deoxy-beta-D-glucopyranose / N-acetyl-beta-D-glucosamine / 2-acetamido-2-deoxy-beta-D-glucose / 2-acetamido-2-deoxy-D-glucose / 2-acetamido-2-deoxy-glucose / N-ACETYL-D-GLUCOSAMINE / N-Acetylglucosamine


Type: D-saccharide, beta linking / Mass: 221.208 Da / Num. of mol.: 2 / Source method: obtained synthetically / Formula: C8H15NO6
IdentifierTypeProgram
DGlcpNAcbCONDENSED IUPAC CARBOHYDRATE SYMBOLGMML 1.0
N-acetyl-b-D-glucopyranosamineCOMMON NAMEGMML 1.0
b-D-GlcpNAcIUPAC CARBOHYDRATE SYMBOLPDB-CARE 1.0
GlcNAcSNFG CARBOHYDRATE SYMBOLGMML 1.0

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Non-polymers , 2 types, 173 molecules

#5: Chemical ChemComp-MES / 2-(N-MORPHOLINO)-ETHANESULFONIC ACID / MES (buffer)


Mass: 195.237 Da / Num. of mol.: 1 / Source method: obtained synthetically / Formula: C6H13NO4S / Comment: pH buffer*YM
#6: Water ChemComp-HOH / water / Water


Mass: 18.015 Da / Num. of mol.: 172 / Source method: isolated from a natural source / Formula: H2O

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Details

Has ligand of interestN

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Experimental details

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Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

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Sample preparation

CrystalDensity Matthews: 2.43 Å3/Da / Density % sol: 49.32 %
Crystal growTemperature: 293 K / Method: vapor diffusion, sitting drop / Details: NaCl, potassium citrate pH 4.2, PEG 8000

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Data collection

DiffractionMean temperature: 100 K / Serial crystal experiment: N
Diffraction sourceSource: SYNCHROTRON / Site: Diamond / Beamline: I04 / Wavelength: 0.9795 Å
DetectorType: DECTRIS EIGER2 XE 16M / Detector: PIXEL / Date: Mar 27, 2021
RadiationProtocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 0.9795 Å / Relative weight: 1
ReflectionResolution: 2.14→58.78 Å / Num. obs: 57917 / % possible obs: 100 % / Redundancy: 13.7 % / CC1/2: 0.996 / Rpim(I) all: 0.088 / Net I/σ(I): 6.5
Reflection shellResolution: 2.14→2.18 Å / Num. unique obs: 2847 / CC1/2: 0.324

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Processing

Software
NameVersionClassification
REFMAC5.8.0267refinement
xia2data reduction
DIALSdata scaling
PHASERphasing
Cootmodel building
RefinementMethod to determine structure: MOLECULAR REPLACEMENT / Resolution: 2.37→58.78 Å / Cor.coef. Fo:Fc: 0.948 / Cor.coef. Fo:Fc free: 0.924 / SU B: 22.968 / SU ML: 0.248 / Cross valid method: FREE R-VALUE / ESU R: 0.396 / ESU R Free: 0.252
Details: Hydrogens have been added in their riding positions
RfactorNum. reflection% reflection
Rfree0.249 2056 4.797 %
Rwork0.2126 40807 -
all0.214 --
obs-42863 99.991 %
Solvent computationIon probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1 Å / Solvent model: MASK BULK SOLVENT
Displacement parametersBiso mean: 54.72 Å2
Baniso -1Baniso -2Baniso -3
1--0.246 Å20 Å20 Å2
2--0.218 Å20 Å2
3---0.027 Å2
Refinement stepCycle: LAST / Resolution: 2.37→58.78 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms6960 0 40 172 7172
Refine LS restraints
Refine-IDTypeDev idealDev ideal targetNumber
X-RAY DIFFRACTIONr_bond_refined_d0.0030.0127220
X-RAY DIFFRACTIONr_bond_other_d0.0010.0186477
X-RAY DIFFRACTIONr_angle_refined_deg1.2411.6519817
X-RAY DIFFRACTIONr_angle_other_deg1.1191.58314848
X-RAY DIFFRACTIONr_dihedral_angle_1_deg6.7715895
X-RAY DIFFRACTIONr_dihedral_angle_2_deg29.02721.538390
X-RAY DIFFRACTIONr_dihedral_angle_3_deg13.613151076
X-RAY DIFFRACTIONr_dihedral_angle_4_deg14.8161549
X-RAY DIFFRACTIONr_chiral_restr0.0420.2901
X-RAY DIFFRACTIONr_gen_planes_refined0.0030.028396
X-RAY DIFFRACTIONr_gen_planes_other0.0010.021898
X-RAY DIFFRACTIONr_nbd_refined0.1740.21037
X-RAY DIFFRACTIONr_symmetry_nbd_other0.1640.26126
X-RAY DIFFRACTIONr_nbtor_refined0.1660.23375
X-RAY DIFFRACTIONr_symmetry_nbtor_other0.0680.23425
X-RAY DIFFRACTIONr_xyhbond_nbd_refined0.1210.2209
X-RAY DIFFRACTIONr_symmetry_nbd_refined0.1390.235
X-RAY DIFFRACTIONr_nbd_other0.1880.2121
X-RAY DIFFRACTIONr_symmetry_xyhbond_nbd_refined0.1270.215
X-RAY DIFFRACTIONr_mcbond_it1.1422.6563574
X-RAY DIFFRACTIONr_mcbond_other1.1422.6563573
X-RAY DIFFRACTIONr_mcangle_it1.853.9824459
X-RAY DIFFRACTIONr_mcangle_other1.853.9834460
X-RAY DIFFRACTIONr_scbond_it1.3822.7793646
X-RAY DIFFRACTIONr_scbond_other1.3352.7763644
X-RAY DIFFRACTIONr_scangle_it2.2494.1175354
X-RAY DIFFRACTIONr_scangle_other2.2494.1195355
X-RAY DIFFRACTIONr_lrange_it3.92129.2077541
X-RAY DIFFRACTIONr_lrange_other3.91329.1277522
X-RAY DIFFRACTIONr_ncsr_local_group_10.0880.053656
X-RAY DIFFRACTIONr_ncsr_local_group_20.0730.056207
X-RAY DIFFRACTIONr_ncsr_local_group_30.0710.053844
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-IDRefine-IDTypeRms dev position (Å)Weight position
11AAAX-RAY DIFFRACTIONLocal ncs0.087530.0501
12DDDX-RAY DIFFRACTIONLocal ncs0.087530.0501
23BBBX-RAY DIFFRACTIONLocal ncs0.073070.0501
24EEEX-RAY DIFFRACTIONLocal ncs0.073070.0501
35CCCX-RAY DIFFRACTIONLocal ncs0.07140.05011
36FFFX-RAY DIFFRACTIONLocal ncs0.07140.05011
LS refinement shell
Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
2.37-2.4310.3521390.3462982X-RAY DIFFRACTION100
2.431-2.4980.3391740.3362874X-RAY DIFFRACTION100
2.498-2.570.3441250.3162831X-RAY DIFFRACTION99.9662
2.57-2.6490.3281500.312721X-RAY DIFFRACTION100
2.649-2.7360.2671280.2662661X-RAY DIFFRACTION100
2.736-2.8320.3621320.262579X-RAY DIFFRACTION100
2.832-2.9380.2831030.2422512X-RAY DIFFRACTION100
2.938-3.0580.2621040.2312402X-RAY DIFFRACTION100
3.058-3.1940.2681030.2222302X-RAY DIFFRACTION100
3.194-3.3490.2321110.2252240X-RAY DIFFRACTION100
3.349-3.5290.2651250.2112068X-RAY DIFFRACTION100
3.529-3.7430.2141320.2081964X-RAY DIFFRACTION100
3.743-40.239990.1831887X-RAY DIFFRACTION100
4-4.3190.182980.161749X-RAY DIFFRACTION100
4.319-4.7280.167830.1351617X-RAY DIFFRACTION100
4.728-5.2820.209730.1611496X-RAY DIFFRACTION100
5.282-6.0910.259730.2041309X-RAY DIFFRACTION100
6.091-7.440.295510.1931140X-RAY DIFFRACTION100
7.44-10.4390.192280.186910X-RAY DIFFRACTION100
10.439-58.780.345250.258552X-RAY DIFFRACTION100
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
110.3768-3.53361.63164.2166-0.90631.29540.44030.34330.2223-0.8751-0.38380.20280.0234-0.1643-0.05650.4031-0.0228-0.0920.6262-0.08210.13243.09313.192-33.673
24.3846-0.8697-2.14791.57670.66395.5010.10710.7120.5677-0.3463-0.3077-0.0596-0.8702-0.00090.20060.2106-0.0235-0.07270.6694-0.02930.1897.41614.322-24.865
33.5881-1.6121-0.26334.7815-0.14086.5224-0.17990.26570.2184-0.19880.03840.3887-0.5675-0.64220.14150.0884-0.0153-0.04570.6038-0.07940.2032-0.52811.563-21.959
43.4055-1.1644-1.36474.7648-1.80882.18610.2180.49920.3455-0.5546-0.06360.1707-0.1630.026-0.15440.3323-0.0866-0.12530.6388-0.00490.18497.5217.066-23.479
54.68883.8656-0.82257.8944-3.08672.17280.0582-0.2232-0.29120.86930.08540.12650.0428-0.2412-0.14350.4297-0.02380.06660.6045-0.05690.099612.98412.4068.652
60.97110.8621-0.05321.34-0.16331.21550.0345-0.0955-0.16580.0645-0.0454-0.02850.3772-0.26850.01090.1355-0.06120.01420.71390.00530.119712.4945.032-0.373
75.8475-1.66221.34691.80081.32845.6952-0.00610.41750.3143-0.3462-0.0231-0.0682-0.44010.16040.02920.1551-0.02950.08420.45050.00210.14721.33721.292-8.902
81.14151.59680.29813.09950.71610.9168-0.00590.0152-0.02930.0327-0.028-0.12270.0226-0.01140.0340.00240.0088-0.00290.4841-0.00090.015121.7225.0690.321
94.9563-5.1462-3.20437.87920.81334.5692-0.36410.2287-0.3110.01480.23410.35940.595-0.65430.130.4195-0.09630.00620.48380.09430.371313.017-5.8567.561
1015.82818.5187.172915.07390.527714.2693-0.4938-0.4432-0.8216-0.70740.20570.9354-0.4257-0.18520.28810.2221-0.0023-0.08540.53410.18460.74059.62244.59219.733
115.12550.63780.03616.17460.74874.0689-0.04580.04740.93510.3338-0.0269-0.2867-0.8674-0.03220.07280.22690.0045-0.05660.4747-0.01160.211718.92352.80316.86
125.2579-1.7277-0.36292.70241.05163.1773-0.04870.16860.84990.0293-0.0312-0.3366-0.44140.25610.080.0867-0.0529-0.03520.46880.00480.151925.32749.73714.296
133.458-0.5644-0.86124.92260.90314.35620.05140.11230.59760.121-0.1080.33-0.5215-0.21520.05650.0776-0.0186-0.00060.45070.03550.147916.88150.1319.368
143.271-5.2532-3.558913.14596.03714.0023-0.1463-0.142-0.0450.65380.03040.23220.00160.04340.11580.42610.0262-0.02710.4478-0.02840.354414.08815.79163.002
156.86-1.7888-0.60463.0953-1.0844.2472-0.0241-0.37740.75660.4811-0.1110.3169-0.769-0.36050.13520.3358-0.0459-0.07430.4519-0.03940.337715.4312.91454.341
164.0524-1.3769-0.65886.0980.53014.29430.0899-0.0820.79730.378-0.10060.3904-0.9328-0.22290.01070.5271-0.0373-0.1290.51710.02790.439416.54619.82751.106
172.5568-0.3144-1.95144.21590.61844.78040.0326-0.22780.54740.6894-0.10470.6068-0.7076-0.20720.0720.3530.021-0.0490.5447-0.04580.362610.37113.54752.64
183.7065-0.25360.29610.66890.88421.463-0.0440.80860.6484-0.1590.0009-0.1632-0.38730.27090.04310.26-0.0405-0.05750.81270.28610.304118.4888.25926.267
198.4717-1.2705-0.87142.62520.45231.8482-0.03590.26430.0443-0.0854-0.12220.0027-0.07790.06320.1580.1822-0.0104-0.070.30480.09040.108216.3513.59429.694
205.1137-0.10611.76082.97370.04873.1557-0.11640.05860.14060.1474-0.0201-0.0985-0.0353-0.02540.13650.09490.0540.00440.47280.03960.01414.6451.62431.198
215.68372.3132.06390.99220.57942.3796-0.13140.0678-0.4867-0.09440.0411-0.22210.20120.10440.09030.18590.09320.04390.46120.02560.1248-5.179-8.12525.817
229.6263-2.2615-0.7642.19641.15321.0883-0.19780.24720.5146-0.00620.1325-0.2069-0.07780.26790.06530.2435-0.0162-0.05450.49350.13880.140117.856.01428.076
2320.36544.85549.21331.81731.00697.6107-0.55990.2940.6895-0.02930.1710.041-0.74940.14970.38880.42170.12340.01070.4454-0.03240.2999-18.8512.3149.825
245.57981.03610.65253.1578-0.46143.743-0.00640.11040.12170.1023-0.03630.5668-0.0374-0.60090.04270.08670.02960.03290.56230.00320.113-26.4552.33613.257
253.87220.03110.06492.1428-0.35583.7409-0.0120.2093-0.1460.1218-0.02380.28480.3303-0.37920.03590.05670.00050.04650.4711-0.00850.0916-21.816-3.81515.286
264.4003-0.64571.72161.6064-0.12812.5181-0.08170.1180.03090.14110.02110.4513-0.0244-0.34080.06060.12250.00490.04890.51740.00220.1406-25.1893.56420.156
Refinement TLS group
IDRefine-IDRefine TLS-IDSelectionSelection details
1X-RAY DIFFRACTION1ALL{ AAA|3-21 }
2X-RAY DIFFRACTION2ALL{ AAA|22-46 }
3X-RAY DIFFRACTION3ALL{ AAA|47-89 }
4X-RAY DIFFRACTION4ALL{ AAA|90-125 }
5X-RAY DIFFRACTION5ALL{ BBB|331-357 }
6X-RAY DIFFRACTION6ALL{ BBB|358-402 }
7X-RAY DIFFRACTION7ALL{ BBB|403-417 }
8X-RAY DIFFRACTION8ALL{ BBB|418-519 }
9X-RAY DIFFRACTION9ALL{ BBB|520-529 }
10X-RAY DIFFRACTION10ALL{ CCC|4-7 }
11X-RAY DIFFRACTION11ALL{ CCC|8-46 }
12X-RAY DIFFRACTION12ALL{ CCC|47-92 }
13X-RAY DIFFRACTION13ALL{ CCC|93-128 }
14X-RAY DIFFRACTION14ALL{ DDD|3-20 }
15X-RAY DIFFRACTION15ALL{ DDD|21-44 }
16X-RAY DIFFRACTION16ALL{ DDD|45-88 }
17X-RAY DIFFRACTION17ALL{ DDD|89-125 }
18X-RAY DIFFRACTION18ALL{ EEE|334-386 }
19X-RAY DIFFRACTION19ALL{ EEE|387-408 }
20X-RAY DIFFRACTION20ALL{ EEE|409-458 }
21X-RAY DIFFRACTION21ALL{ EEE|459-498 }
22X-RAY DIFFRACTION22ALL{ EEE|499-529 }
23X-RAY DIFFRACTION23ALL{ FFF|3-8 }
24X-RAY DIFFRACTION24ALL{ FFF|9-46 }
25X-RAY DIFFRACTION25ALL{ FFF|47-88 }
26X-RAY DIFFRACTION26ALL{ FFF|89-129 }

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  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

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Yorodumi

Thousand views of thousand structures

  • Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
  • This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
  • The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi

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