+Open data
-Basic information
Entry | Database: PDB / ID: 8odp | ||||||
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Title | Structure of human RTCB with GMPCPP in complex with Archease | ||||||
Components |
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Keywords | LIGASE / archease / RTCB / human / tRNA / GMPCPP | ||||||
Function / homology | Function and homology information : / tRNA-splicing ligase complex / 3'-phosphate/5'-hydroxy nucleic acid ligase / RNA ligase (ATP) activity / tRNA splicing, via endonucleolytic cleavage and ligation / vinculin binding / tRNA processing in the nucleus / tRNA processing / placenta development / nuclear envelope ...: / tRNA-splicing ligase complex / 3'-phosphate/5'-hydroxy nucleic acid ligase / RNA ligase (ATP) activity / tRNA splicing, via endonucleolytic cleavage and ligation / vinculin binding / tRNA processing in the nucleus / tRNA processing / placenta development / nuclear envelope / in utero embryonic development / intracellular membrane-bounded organelle / endoplasmic reticulum membrane / GTP binding / RNA binding / nucleoplasm / metal ion binding / nucleus / cytosol / cytoplasm Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.3 Å | ||||||
Authors | Kopp, J. / Gerber, J.L. / Peschek, J. | ||||||
Funding support | Germany, 1items
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Citation | Journal: Nat Commun / Year: 2024 Title: Structural and mechanistic insights into activation of the human RNA ligase RTCB by Archease. Authors: Gerber, J.L. / Morales Guzman, S.I. / Worf, L. / Hubbe, P. / Kopp, J. / Peschek, J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 8odp.cif.gz | 1.2 MB | Display | PDBx/mmCIF format |
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PDB format | pdb8odp.ent.gz | 881.6 KB | Display | PDB format |
PDBx/mmJSON format | 8odp.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/od/8odp ftp://data.pdbj.org/pub/pdb/validation_reports/od/8odp | HTTPS FTP |
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-Related structure data
Related structure data | 8bttC 8btxC 8odoC C: citing same article (ref.) |
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Similar structure data | Similarity search - Function & homologyF&H Search |
-Links
-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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