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Yorodumi- PDB-8gdh: Solution structure of the Neutrophil Serine Protease Inhibitor, EapH1 -
+Open data
-Basic information
Entry | Database: PDB / ID: 8gdh | |||||||||
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Title | Solution structure of the Neutrophil Serine Protease Inhibitor, EapH1 | |||||||||
Components | Cell surface protein map-w | |||||||||
Keywords | IMMUNE SYSTEM/INHIBITOR / protease / protease inhibitor / enzyme kinetics / innate immunity / immune evasion / IMMUNE SYSTEM / IMMUNE SYSTEM-INHIBITOR complex | |||||||||
Function / homology | MAP domain / MAP domain / MAP repeat profile. / Superantigen toxin, C-terminal / extracellular region / Cell surface protein map-w Function and homology information | |||||||||
Biological species | Staphylococcus aureus (bacteria) | |||||||||
Method | SOLUTION NMR / simulated annealing | |||||||||
Authors | Mishra, N.B. / Geisbrecht, B.V. / Prakash, O. | |||||||||
Funding support | United States, 2items
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Citation | Journal: J.Biol.Chem. / Year: 2023 Title: Simultaneous inhibition of two neutrophil serine proteases by the S. aureus innate immune evasion protein EapH2. Authors: Mishra, N. / Herdendorf, T.J. / Prakash, O. / Geisbrecht, B.V. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 8gdh.cif.gz | 802.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb8gdh.ent.gz | 682.7 KB | Display | PDB format |
PDBx/mmJSON format | 8gdh.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 8gdh_validation.pdf.gz | 405.6 KB | Display | wwPDB validaton report |
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Full document | 8gdh_full_validation.pdf.gz | 541 KB | Display | |
Data in XML | 8gdh_validation.xml.gz | 37.5 KB | Display | |
Data in CIF | 8gdh_validation.cif.gz | 59.4 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/gd/8gdh ftp://data.pdbj.org/pub/pdb/validation_reports/gd/8gdh | HTTPS FTP |
-Related structure data
Related structure data | 8g24C 8g25C 8g26C 8gdgC C: citing same article (ref.) |
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Similar structure data | Similarity search - Function & homologyF&H Search |
Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 12722.285 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Staphylococcus aureus (bacteria) Gene: map, G6Y24_08670, GZ128_06505, GZ156_01355, SA0759_01852, SA950122_01799, SAJPND4_02182 Production host: Escherichia coli BL21(DE3) (bacteria) / References: UniProt: A0A2W3EU09 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Type: solution Contents: 1 mM [U-100% 13C; U-100% 15N] EapH1, 95% H2O/5% D2O Details: 15N_13C_EapH1 was dissolved in 95% H2O/5% D2O / Label: 15N_13C_EapH1 / Solvent system: 95% H2O/5% D2O |
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Sample | Conc.: 1 mM / Component: EapH1 / Isotopic labeling: [U-100% 13C; U-100% 15N] |
Sample conditions | Ionic strength: 50 mM / Label: 1 / pH: 6.5 / Pressure: 1 atm / Temperature: 298 K / Temperature err: 0.5 |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 4 | ||||||||||||||||||||||||||||||||
NMR representative | Selection criteria: target function | ||||||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: target function / Conformers calculated total number: 200 / Conformers submitted total number: 20 |