+Open data
-Basic information
Entry | Database: PDB / ID: 8dk7 | ||||||
---|---|---|---|---|---|---|---|
Title | Crystal structure of theophylline aptamer soaked with TAL2 | ||||||
Components |
| ||||||
Keywords | RNA/IMMUNE SYSTEM / RNA / aptamer / theophylline / RNA-IMMUNE SYSTEM complex | ||||||
Function / homology | RNA / RNA (> 10) Function and homology information | ||||||
Biological species | Homo sapiens (human) synthetic construct (others) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.46 Å | ||||||
Authors | Menichelli, E. / Spraggon, G. | ||||||
Funding support | 1items
| ||||||
Citation | Journal: Proc.Natl.Acad.Sci.USA / Year: 2022 Title: Discovery of small molecules that target a tertiary-structured RNA. Authors: Menichelli, E. / Lam, B.J. / Wang, Y. / Wang, V.S. / Shaffer, J. / Tjhung, K.F. / Bursulaya, B. / Nguyen, T.N. / Vo, T. / Alper, P.B. / McAllister, C.S. / Jones, D.H. / Spraggon, G. / ...Authors: Menichelli, E. / Lam, B.J. / Wang, Y. / Wang, V.S. / Shaffer, J. / Tjhung, K.F. / Bursulaya, B. / Nguyen, T.N. / Vo, T. / Alper, P.B. / McAllister, C.S. / Jones, D.H. / Spraggon, G. / Michellys, P.Y. / Joslin, J. / Joyce, G.F. / Rogers, J. | ||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 8dk7.cif.gz | 486.3 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb8dk7.ent.gz | 350.8 KB | Display | PDB format |
PDBx/mmJSON format | 8dk7.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 8dk7_validation.pdf.gz | 494.2 KB | Display | wwPDB validaton report |
---|---|---|---|---|
Full document | 8dk7_full_validation.pdf.gz | 531.5 KB | Display | |
Data in XML | 8dk7_validation.xml.gz | 38.1 KB | Display | |
Data in CIF | 8dk7_validation.cif.gz | 51.7 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/dk/8dk7 ftp://data.pdbj.org/pub/pdb/validation_reports/dk/8dk7 | HTTPS FTP |
-Related structure data
Related structure data | 8d28C 8d29C 8d2aC 8d2bC 8d5lC 8d5oC 6b14S S: Starting model for refinement C: citing same article (ref.) |
---|---|
Similar structure data | Similarity search - Function & homologyF&H Search |
-Links
-Assembly
Deposited unit |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2 |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Unit cell |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
|