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- PDB-8dba: Crystal structure of dodecameric KaiC -

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Basic information

Entry
Database: PDB / ID: 8dba
TitleCrystal structure of dodecameric KaiC
ComponentsCircadian clock protein KaiC
KeywordsCIRCADIAN CLOCK PROTEIN / autokinase
Function / homology
Function and homology information


kinase activity / non-specific serine/threonine protein kinase / ATP hydrolysis activity / ATP binding / metal ion binding
Similarity search - Function
Circadian clock protein kinase KaiC / : / : / KaiC domain / KaiC domain profile. / KaiC-like domain / KaiC / P-loop containing nucleotide triphosphate hydrolases / ATPases associated with a variety of cellular activities / AAA+ ATPase domain ...Circadian clock protein kinase KaiC / : / : / KaiC domain / KaiC domain profile. / KaiC-like domain / KaiC / P-loop containing nucleotide triphosphate hydrolases / ATPases associated with a variety of cellular activities / AAA+ ATPase domain / Rossmann fold / P-loop containing nucleoside triphosphate hydrolase / 3-Layer(aba) Sandwich / Alpha Beta
Similarity search - Domain/homology
ADENOSINE-5'-DIPHOSPHATE / non-specific serine/threonine protein kinase
Similarity search - Component
Biological speciesCereibacter sphaeroides (bacteria)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3.5 Å
AuthorsPadua, R.A.P. / Grant, T. / Pitsawong, W. / Hoemberger, M.S. / Otten, R. / Bradshaw, N. / Grigorieff, N. / Kern, D.
Funding support United States, 1items
OrganizationGrant numberCountry
Howard Hughes Medical Institute (HHMI) United States
CitationJournal: Nature / Year: 2023
Title: From primordial clocks to circadian oscillators.
Authors: Warintra Pitsawong / Ricardo A P Pádua / Timothy Grant / Marc Hoemberger / Renee Otten / Niels Bradshaw / Nikolaus Grigorieff / Dorothee Kern /
Abstract: Circadian rhythms play an essential part in many biological processes, and only three prokaryotic proteins are required to constitute a true post-translational circadian oscillator. The evolutionary ...Circadian rhythms play an essential part in many biological processes, and only three prokaryotic proteins are required to constitute a true post-translational circadian oscillator. The evolutionary history of the three Kai proteins indicates that KaiC is the oldest member and a central component of the clock. Subsequent additions of KaiB and KaiA regulate the phosphorylation state of KaiC for time synchronization. The canonical KaiABC system in cyanobacteria is well understood, but little is known about more ancient systems that only possess KaiBC. However, there are reports that they might exhibit a basic, hourglass-like timekeeping mechanism. Here we investigate the primordial circadian clock in Rhodobacter sphaeroides, which contains only KaiBC, to elucidate its inner workings despite missing KaiA. Using a combination of X-ray crystallography and cryogenic electron microscopy, we find a new dodecameric fold for KaiC, in which two hexamers are held together by a coiled-coil bundle of 12 helices. This interaction is formed by the carboxy-terminal extension of KaiC and serves as an ancient regulatory moiety that is later superseded by KaiA. A coiled-coil register shift between daytime and night-time conformations is connected to phosphorylation sites through a long-range allosteric network that spans over 140 Å. Our kinetic data identify the difference in the ATP-to-ADP ratio between day and night as the environmental cue that drives the clock. They also unravel mechanistic details that shed light on the evolution of self-sustained oscillators.
History
DepositionJun 14, 2022Deposition site: RCSB / Processing site: RCSB
Revision 1.0Mar 22, 2023Provider: repository / Type: Initial release
Revision 1.1Apr 5, 2023Group: Database references / Category: citation / citation_author
Item: _citation.pdbx_database_id_PubMed / _citation.title ..._citation.pdbx_database_id_PubMed / _citation.title / _citation_author.identifier_ORCID / _citation_author.name
Revision 1.2Apr 19, 2023Group: Database references / Category: citation
Item: _citation.journal_volume / _citation.page_first / _citation.page_last
Revision 1.3Oct 25, 2023Group: Data collection / Database references / Refinement description
Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / citation_author / pdbx_initial_refinement_model
Item: _citation_author.identifier_ORCID
Revision 1.4Dec 25, 2024Group: Advisory / Derived calculations / Structure summary
Category: pdbx_entry_details / pdbx_validate_close_contact ...pdbx_entry_details / pdbx_validate_close_contact / struct_conn / struct_conn_type
Item: _pdbx_entry_details.has_protein_modification

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Assembly

Deposited unit
A: Circadian clock protein KaiC
B: Circadian clock protein KaiC
C: Circadian clock protein KaiC
D: Circadian clock protein KaiC
E: Circadian clock protein KaiC
F: Circadian clock protein KaiC
G: Circadian clock protein KaiC
H: Circadian clock protein KaiC
I: Circadian clock protein KaiC
J: Circadian clock protein KaiC
K: Circadian clock protein KaiC
L: Circadian clock protein KaiC
hetero molecules


Theoretical massNumber of molelcules
Total (without water)761,79759
Polymers750,98512
Non-polymers10,81247
Water1,20767
1


  • Idetical with deposited unit
  • defined by author&software
  • Evidence: gel filtration
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area105200 Å2
ΔGint-614 kcal/mol
Surface area227620 Å2
MethodPISA
Unit cell
Length a, b, c (Å)105.110, 136.090, 146.200
Angle α, β, γ (deg.)93.130, 94.430, 108.090
Int Tables number1
Space group name H-MP1
Space group name HallP1
Symmetry operation#1: x,y,z

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Components

#1: Protein
Circadian clock protein KaiC


Mass: 62582.062 Da / Num. of mol.: 12
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Cereibacter sphaeroides (bacteria) / Production host: Escherichia coli BL21(DE3) (bacteria) / Strain (production host): BL21(DE3) / References: UniProt: B9KWX8
#2: Chemical...
ChemComp-ADP / ADENOSINE-5'-DIPHOSPHATE


Mass: 427.201 Da / Num. of mol.: 24 / Source method: obtained synthetically / Formula: C10H15N5O10P2 / Feature type: SUBJECT OF INVESTIGATION / Comment: ADP, energy-carrying molecule*YM
#3: Chemical...
ChemComp-MG / MAGNESIUM ION


Mass: 24.305 Da / Num. of mol.: 23 / Source method: obtained synthetically / Formula: Mg / Feature type: SUBJECT OF INVESTIGATION
#4: Water ChemComp-HOH / water


Mass: 18.015 Da / Num. of mol.: 67 / Source method: isolated from a natural source / Formula: H2O
Has ligand of interestY
Has protein modificationN

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Experimental details

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Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

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Sample preparation

CrystalDensity Matthews: 2.63 Å3/Da / Density % sol: 53.23 %
Crystal growTemperature: 291 K / Method: vapor diffusion, sitting drop
Details: 0.1 M HEPES sodium pH 7.5, 0.2 M Magnesium chloride hexahydrate, 30% v/v PEG 400

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Data collection

DiffractionMean temperature: 100 K / Serial crystal experiment: N
Diffraction sourceSource: SYNCHROTRON / Site: ALS / Beamline: 8.2.1 / Wavelength: 1.0001 Å
DetectorType: ADSC QUANTUM 315r / Detector: CCD / Date: Sep 12, 2017
RadiationProtocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 1.0001 Å / Relative weight: 1
ReflectionResolution: 3.5→48.1 Å / Num. obs: 94643 / % possible obs: 97.62 % / Redundancy: 1.9 % / Biso Wilson estimate: 90.79 Å2 / CC1/2: 0.937 / Net I/σ(I): 2.57
Reflection shellResolution: 3.5→3.625 Å / Mean I/σ(I) obs: 0.73 / Num. unique obs: 9047 / CC1/2: 0.128

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Processing

Software
NameVersionClassification
PHENIX1.20.1_4487refinement
MOSFLMdata reduction
Aimlessdata scaling
PHASERphasing
RefinementMethod to determine structure: MOLECULAR REPLACEMENT
Starting model: 1tf7
Resolution: 3.5→48.1 Å / SU ML: 0.5624 / Cross valid method: FREE R-VALUE / σ(F): 1.96 / Phase error: 31.0869
Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
RfactorNum. reflection% reflection
Rfree0.2793 1988 2.11 %
Rwork0.2356 92163 -
obs0.2365 94151 97.66 %
Solvent computationShrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL
Displacement parametersBiso mean: 104.25 Å2
Refinement stepCycle: LAST / Resolution: 3.5→48.1 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms46721 0 671 67 47459
Refine LS restraints
Refine-IDTypeDev idealNumber
X-RAY DIFFRACTIONf_bond_d0.002448118
X-RAY DIFFRACTIONf_angle_d0.629665018
X-RAY DIFFRACTIONf_chiral_restr0.04017379
X-RAY DIFFRACTIONf_plane_restr0.00398410
X-RAY DIFFRACTIONf_dihedral_angle_d7.62636914
LS refinement shell
Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
3.5-3.590.37151330.34676299X-RAY DIFFRACTION93.33
3.59-3.680.33251410.31746482X-RAY DIFFRACTION96.64
3.68-3.790.32531430.30226586X-RAY DIFFRACTION97.54
3.79-3.920.35681430.29256570X-RAY DIFFRACTION97.77
3.92-4.060.35691430.2766653X-RAY DIFFRACTION98.09
4.06-4.220.31741430.26646630X-RAY DIFFRACTION98.06
4.22-4.410.28141420.2266573X-RAY DIFFRACTION98.06
4.41-4.640.26681430.20026614X-RAY DIFFRACTION98.3
4.64-4.930.2421430.19946623X-RAY DIFFRACTION98.26
4.93-5.310.24041430.20866646X-RAY DIFFRACTION98.35
5.31-5.850.24311430.23266635X-RAY DIFFRACTION98.27
5.85-6.690.31061430.24286615X-RAY DIFFRACTION98.37
6.69-8.420.25351430.22166639X-RAY DIFFRACTION98.33
8.42-48.10.23381420.19216598X-RAY DIFFRACTION97.82
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
14.64511456811-0.119728384664-0.1110058255712.48701041912-0.02574537151183.50140283156-0.244502767106-1.07675578041-0.7487784274651.213156495320.177111508095-0.0152606367710.768086161691-0.1631513934890.0898039595751.52706153821-0.08628767877820.01211373189730.8617988044470.02709999496820.67625884324520.549-45.497149.702
22.392468940720.3246709454330.5069802653033.4120265979-2.260456223583.119454045320.161115481772-0.141223919583-0.08250623072660.251580421065-0.222900773279-0.1720852917440.09165973564650.1733010234120.1587230121670.997400293512-0.112620941891-0.1652406198370.5087453159790.1193269570150.62605503207731.217-5.661130.856
31.85882918364-0.0916429941842-0.4674458879336.96235509937-2.633126497963.381216132040.281283345537-0.05060947749550.3555374822280.554341130255-0.0359651911298-1.149597049730.5395271331990.4744728750031.585252357560.531594860341-0.1700517768370.154458445960.6116970501490.8998584268781.3467058281635.88749.91597.403
42.4478978105-0.275141447679-0.246871663351.82285039586-0.6179914863983.45388063563-0.175894638781-0.314879913211-0.7424987617840.18619006772-0.0830866589290.1342243332580.322486206706-0.3765985780240.2319364198161.12676712633-0.1211538288850.2258706250990.6952551882-0.1272017767490.863073088023-8.015-45.576137.948
54.873193398870.3705537918441.064844137024.00717425382-0.5876737866732.907727378420.15453841114-0.188424223775-0.1279906477640.3365971371130.02207674609170.1994775045180.0515431509334-0.333424607788-0.1231543814740.909441603398-0.01910183575490.04947089071510.4630527181240.123437329670.5775030711931.712-3.576124.42
60.2809168191551.44649151294-1.073905194846.10010091598-3.241715469672.55192178439-0.6798596451830.0354390262297-0.02900544907240.1624465175860.496792132776-0.902036785294-0.0357926351999-0.7698060856990.08336183931511.10824073153-0.115130719288-0.2362985029470.6966791270570.2335491500471.1283473968716.8453.61293.227
72.90969562889-0.262573672908-0.3953671171861.96746914085-0.5858122175164.02396544431-0.0952461903235-0.884408606413-0.6218998823560.828553179342-0.0465711005866-0.1480697052940.8657698205130.1143057988630.09170810690441.115208329170.108944394816-0.1752711042290.8530995455220.0815727614130.71505713302544.425-55.86133.117
81.022659197830.470863150927-0.04192240778393.66658086376-2.818944251621.92425965459-0.06458731202450.1548760654470.1092321082910.747850282258-0.289381956222-1.74324268549-0.2472973564350.5525801994590.3986915989250.686571476702-0.0243615287445-0.1267667666120.842503888974-0.1104758615760.80460007883149.473-25.51123.248
92.700449935190.093303700486-1.032081105422.924622326451.08800391765.092999056450.0576947465098-0.302088796278-0.3258900580330.144978652552-0.128987792808-0.421642091390.2301232965950.4109031115030.05180094954090.614278538715-0.0447848630108-0.2642366288660.5971261492070.2693554670080.78090014941750.331-15.322108.485
101.075605018810.426794691363-0.3356922037635.05253588503-2.180202950421.2817579682-0.773319362039-0.189207256121-0.337229867793-0.2106978090070.9550269815570.0569990210690.108032220663-0.0411607491585-0.1005986315811.4704339780.149036487567-0.09788415867470.5737727124470.250087970020.97767277233646.18147.72180.971
113.0771428561-0.790044822047-0.1733767226496.57089963276-0.01153436416134.31520383985-0.181563033557-0.058051760419-0.8194209947970.7030032635840.1682125675410.2855714779140.484589940994-0.1740562786590.01658961377570.6227912083970.00857634870818-0.03653678645410.5442386254240.00462637380570.75182765926110.102-68.88193.642
121.516449691980.99998291491-0.7545779958062.8272731013-2.437972420171.61448814805-0.03187431686390.112372122217-0.2950080722080.2404821862270.0509841571121-0.05522342072060.1454948565980.0479399807158-0.01985354468430.790059637391-0.148521878896-0.1657286601190.568476703350.09463685095380.81719820989611.915-14.18874.867
134.42036275112-1.39891382871-0.6933344288322.633828931980.7978925317944.0074286984-0.359919729142-0.849567915323-0.3105255658980.6619857880940.211386471737-0.1442127609260.598669052842-0.08843993836260.182567759410.7512959645130.0197131364367-0.07936702371190.5250812702430.1498134542880.61245663501938.382-68.14105.358
140.647774464465-0.6821083765910.2616936000132.42693906581-2.367758420372.223033877010.07428118474150.2228132465090.00854943036812-0.159281476486-0.33723053811-0.430368699401-0.09984933998370.3395549776460.1640018348510.703721204956-0.0451744386102-0.1015323532160.635312537093-0.01925384172180.59502571991845.867-32.87590.678
153.61499427239-0.4574123513071.560110656924.04304807088-0.717649440853.60026663603-0.00295206935684-0.0813924940464-0.669679741340.01434661013070.1011825003580.3301884488940.230403653758-0.108792266062-0.02147184971210.730383205522-0.06702007358230.02218928216640.4276262031840.06941607621930.74561137157438.471-24.94282.498
160.5049487447991.611976992030.5647333095846.9688665018-1.752961552551.71990584407-0.7813437744570.261330048460.133750712004-0.5694064919581.302570769140.4513232571570.2665516164-0.345938956242-0.2949673372291.17183319845-0.0470683637397-0.1044384679880.7593999403940.240161925761.2649977134137.84235.18966.504
174.321914387581.62908460558-1.103602753034.4017140761-0.5153655692532.968067060740.125515889431-0.187991122929-0.5983159146470.615425780013-0.08471318543660.4926859884670.808775293428-0.136315949425-0.02292459090410.657549115153-0.02812455356520.06514144001910.491377427881-0.1059091321230.767096726084-13.243-57.794109.557
181.628344926780.734630289483-0.180266784824.7539612895-1.615558484940.5873254368820.0608328331287-0.007756258650690.047656405514-0.08314403613120.1234316244230.5522950930720.453711028844-0.44898253141-0.248239801880.543722882754-0.147089615623-0.008093726280050.6737089201580.04344610011980.73274271686-14.488-15.08398.674
193.18254251283-0.03486705063670.8593304390912.409735956241.600747671354.090166947690.238840347885-0.377580140512-0.4213901541110.392004311338-0.1454913085130.1949531938110.453503964838-0.1620848478710.08468226291440.562292761557-0.102775204119-0.1544575213670.5078465063240.1455601569020.600683367362-5.449-14.10498.278
201.73493784681.30996681397-2.44201149897.14886700055-3.969333001923.213500685560.431508818384-0.1191266358460.2351840538912.099797838780.00436813988990.9906068133-1.39854569562-0.512688504036-0.3241771664911.05009336502-0.101562777641-0.1100942701670.6914361246310.1261234777230.9519606570518.73645.14577.823
211.89790956041-0.9946846536470.3681045335643.02446348390.6174298703683.9140228385-0.1664927261570.1712889134370.565163694723-0.473965604144-0.02794076369740.210508259612-0.833650352077-0.2596042374460.09969316411710.891437045260.036620088116-0.325610211920.600430658148-0.05193770861151.097162828958.139181.95433.654
221.624075270290.249464202963-1.531150613315.1009358969-2.260911158032.03870540816-0.0966382078608-0.899782653156-0.05142981220961.38747060433-0.1552945174740.412587304945-0.6414309891940.649308999490.08506903125631.13504451025-0.360398449081-0.4872900302160.8606520005240.08960701823441.033539488060.781148.86549.47
232.23745043309-1.154881831460.9438013067452.021930820441.392909045942.98053948510.005864869960590.2282245050260.230173546628-0.491098781723-0.0410349225130.249933371625-0.875778091-0.584741553836-0.1030059359711.091374159690.0735459836414-0.1719556279760.5912970660130.1984768102150.7566265892161.395141.6341.576
242.3103578506-1.11997951336-0.1871544227861.373597572152.139225823764.725480204240.106168377043-0.310080955341-0.360726844875-0.1492971777070.181827628698-0.1446888186180.4797094592130.5686717991-0.1595644766640.636477084012-0.110503169146-0.04622971411320.5246181314820.2254773005460.639717207618.388125.38551.057
250.410408795622-1.15356490020.5178396809135.43619850978-4.105681554642.74473499793-0.3622957801960.1502504752370.482741472301-1.141400780370.949350093209-0.3259654039420.159479388279-1.05636530696-0.3217433461951.417181799860.172436041804-0.01947348552250.6869333920770.3389817695371.2236571607611.34576.35868.914
263.17752012046-1.95865753837-0.2443294883994.787178763770.7652136685254.5049882565-0.3593944562180.04829989007960.585182601603-0.6095079208850.5557022408590.368424832014-1.043772198720.733706394664-0.13158092120.661781869222-0.24987158101-0.1225652653080.6244533347750.02623708262640.50306557945430.925186.45953.62
274.272131120820.8291177700260.9405152506432.739669156470.7100781616512.74965552708-0.285949592560.09012791770940.5730602599720.03591235644290.1001945525180.252111919112-0.6677191809890.1466359916010.02236104591370.7246062700520.01953956665140.04846375278060.2876144119740.120811749760.45869271387622.954147.00867.666
280.381929323092-1.286028198281.192519260173.70541220562-0.770536044064-0.0895299027913-0.240194129129-0.38738259410.02777338080410.2139367499490.6569413812860.281144463656-0.193845019117-0.181300164963-0.07466422939221.084009116540.0484063162485-0.01845861821870.683563429290.350649264781.6388968265621.69693.91180.837
292.42512073628-0.884571956878-0.4773732383381.200742172920.3963114477061.95890835769-0.119633139290.9240162903750.817050679362-0.241346309982-0.2516291396370.0776676975665-0.861852617085-0.7291952639340.08661630424331.834850997160.0671265591961-0.6151128223420.901281266630.03931656824281.0459370724910.461167.440.488
301.89706492992-0.317629348419-0.5660879132241.367683806771.169031148452.576228854180.262011896721-0.06109990457630.638661029853-0.995858281136-0.2944562265310.476984488911-0.517140326359-0.4910745887530.1163834481161.09043780780.106184998315-0.4467293937890.755973681332-0.1921961593531.148969763216.042171.25311.912
310.724845908844-0.509212859839-0.1010735496923.62907983502-0.4180883400141.28569170409-0.195977409106-0.007298385466170.06483006076830.272601201480.368166996520.663037335093-0.038019029695-0.290411525847-0.143800313830.871832070881-0.00663083482621-0.1931722632880.597651857568-0.06620919038620.7640646919438.494135.6320.328
323.413603720211.23782550229-0.3720381950633.38296197467-0.07872210249882.166750374650.06265785668130.06652979585670.299198883011-0.263786957659-0.0483451114560.1083282944820.1950050240540.183406221459-0.02223440850671.004665705590.0186313052755-0.1172079209420.5380666294190.0982546327230.42121995706416.577130.82513.94
334.52736902414-0.1096637860250.1499255729861.10532117711-0.4908698283490.913777747225-0.0895113986638-0.320527412402-0.204760793047-0.489010104878-0.07101871963380.01542914923570.780515943060.2840691963850.1262732346931.057349062820.0631894645693-0.2265063526010.5470523859380.1596451152330.69466364654816.699115.99329.543
340.406789811381.18940253628-1.306613275316.99970606915-2.474942385433.70412466265-0.6391486388010.851107614633-0.249925557359-0.8825649431870.262032674994-0.9875921234090.0914580648739-0.4218517805420.3909360758950.888601849729-0.01524062818610.07105088992691.056609977320.4010159906411.2353414362219.02969.60551.913
352.15362998589-0.464267146304-0.01006888666333.120459491460.6018340752971.40123938439-0.0147981540953-0.06233539223520.529334714313-0.543702476523-0.00889350093125-0.263886223762-1.179283107140.9342111615550.156244458261.20838927442-0.2819076054250.001342166645591.306367355590.2262855748250.9215852518365.832170.20415.901
360.0120201312556-0.4659558754690.07396164939121.91013809524-0.693993416810.396481911142-0.200659403849-0.0671401054883-0.440375546643-0.537739051290.36058129413-0.1460715772250.136678717730.3637977336640.00342988666590.985758236182-0.06691200084620.07221828485411.022448441960.05973952897730.81910038141465.772135.91326.182
371.597571727530.06329128800760.5820373504062.179875862370.5499881694445.46198822411-0.07143568662380.00459720511636-0.045658646105-0.101844501244-0.271707060102-1.23502369583-0.4794432183660.2893938868330.2986863784720.8082887741760.08134436621110.1026256965410.5534893964160.2837656901841.0305658830163.378130.32641.375
381.422577179910.6050003394230.263359804938.98133288199-2.205518842810.34045762217-0.471388442351-0.1306509477460.4606971036670.290419105740.870192602131-0.0675034375594-0.185085852017-0.259594598171-0.07245813079471.34539785269-0.220921481897-0.06793039339910.6502336256940.05892377861850.95535138696448.13969.0867.116
391.69529922847-1.044502571740.4737829864312.457716872530.8572039266330.948048438479-0.744676281941.406389138840.0793338425034-1.378846392240.219627970898-0.245404277210.2793576164360.3657037258190.4179117901841.481629097750.009062071017280.07402557843631.288565057720.04329458828450.73221321872944.075157.223-4.757
402.482982098880.978365368292-0.5821776513450.965781525485-0.3889042918930.597600645651-0.5179043519970.6191975873090.703964765028-0.9172983448660.332425693210.1460321808460.2648019672450.181537452130.4860468792831.46199332040.0530472546747-0.1044667737031.337371882090.1517270188520.82973359539640.708167.056-2.269
410.3709289508890.667406848420.05002075196741.391887943480.1186084928920.4742078534790.05704945941340.0991484686044-0.593034534424-0.3517627486220.0183125754022-0.9713524244440.8237871398090.3897105736120.1625711809111.327826509670.137130450566-0.1812439900271.114376852730.02793072206560.56085975942636.393141.6614.384
422.388466407880.7137615490441.191050030952.37647039504-0.1785295975422.11332876072-0.2450642623330.1691181250510.275512385442-1.14270106209-0.090367878236-0.22723099393-0.2174955870320.2082279256360.3799559302191.181061758330.164423240580.1066778101710.6405582206660.1742068982210.62996713719545.472121.24217.977
431.136179890850.768523054489-0.4112301313734.34738510284-1.596748191261.227339702180.668718170446-0.181239648838-0.6284658331361.21972934354-1.14252860457-2.13457030874-0.7630915489660.5006302543730.2566190306671.35451122731-0.020441299988-0.09875341530990.7305878773160.3902443317011.2819117001237.82667.07351.194
442.30842375885-0.2474963718460.5953890525110.348445624989-0.06200191121770.531392943968-0.0545475943022-0.8605079991530.1649354828360.07367578547310.274822000682-1.03744848935-0.334663507161.677297969720.5673021110050.233184654929-0.337018688066-0.5793204600812.03457733135-0.3659081362210.88165728037963.763174.48946.336
451.88727197039-0.1249882330931.564424769732.076206705270.8270788972341.61169954494-0.4679037698860.2896387929540.8832282509020.207476694934-0.385378327686-0.740478333763-0.1794718114950.3567372953620.09930568538161.140973382-0.301061426853-0.08088155136961.690077539550.07687117431261.4019360464861.818189.67945.263
462.635785977050.935038009454-0.4891238259061.06580280042-0.4305819744511.234430030280.0722766976629-1.266490720510.368140664608-0.0613824259476-0.1166233017350.1516307055320.1879792889250.10139596922-0.03948285141450.741944761604-0.148165005163-0.1270668315121.35420876325-0.1022003786810.67283668659555.225170.7241.758
473.08322833752-0.37141836259-1.874772762862.177786134431.309292170392.868539098130.230606952090.0796177408140.6217872087570.194350354048-0.146583486862-0.670881382875-0.4229958002290.2907243468730.01676736356810.772527264482-0.0900389636837-0.2455604195560.4341277853630.1411071566170.90659676170153.191146.36767.685
483.303995863680.161385730091-0.5836186331031.335695872750.9056443915253.755514105180.4549883817330.621405518251-0.2975950220890.245756900047-0.472937272297-0.524406352877-0.1276684784480.233597010930.1032312555330.489951233103-0.109354036888-0.08873032571280.3697726020470.2885207445590.66684792886450.523133.19562.4
491.0489343896-1.49282485153-0.8231751732536.59445650752-1.560037091111.37277693148-1.060285044940.1815410581770.2145294850020.6113735307741.33227373333-0.1116361906860.0080063860276-0.3159195742880.322994046521.19637040224-0.102087443625-0.1061674151580.5958103687490.3339919766721.3120969249641.45679.95682.365
Refinement TLS group
IDRefine-IDRefine TLS-IDSelection detailsAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1( CHAIN A AND RESID 2:219 )A2 - 219
2X-RAY DIFFRACTION2( CHAIN A AND RESID 220:475 )A220 - 475
3X-RAY DIFFRACTION3( CHAIN A AND RESID 476:530 )A476 - 530
4X-RAY DIFFRACTION4( CHAIN B AND RESID 2:229 )B2 - 229
5X-RAY DIFFRACTION5( CHAIN B AND RESID 230:474 )B230 - 474
6X-RAY DIFFRACTION6( CHAIN B AND RESID 475:536 )B475 - 536
7X-RAY DIFFRACTION7( CHAIN C AND RESID 2:209 )C2 - 209
8X-RAY DIFFRACTION8( CHAIN C AND RESID 210:255 )C210 - 255
9X-RAY DIFFRACTION9( CHAIN C AND RESID 256:474 )C256 - 474
10X-RAY DIFFRACTION10( CHAIN C AND RESID 475:539 )C475 - 539
11X-RAY DIFFRACTION11( CHAIN D AND RESID 1:219 )D1 - 219
12X-RAY DIFFRACTION12( CHAIN D AND RESID 220:528 )D220 - 528
13X-RAY DIFFRACTION13( CHAIN E AND RESID 2:208 )E2 - 208
14X-RAY DIFFRACTION14( CHAIN E AND RESID 209:277 )E209 - 277
15X-RAY DIFFRACTION15( CHAIN E AND RESID 278:474 )E278 - 474
16X-RAY DIFFRACTION16( CHAIN E AND RESID 475:528 )E475 - 528
17X-RAY DIFFRACTION17( CHAIN F AND RESID 2:219 )F2 - 219
18X-RAY DIFFRACTION18( CHAIN F AND RESID 220:325 )F220 - 325
19X-RAY DIFFRACTION19( CHAIN F AND RESID 326:474 )F326 - 474
20X-RAY DIFFRACTION20( CHAIN F AND RESID 475:530 )F475 - 530
21X-RAY DIFFRACTION21( CHAIN G AND RESID 2:219 )G2 - 219
22X-RAY DIFFRACTION22( CHAIN G AND RESID 220:256 )G220 - 256
23X-RAY DIFFRACTION23( CHAIN G AND RESID 257:390 )G257 - 390
24X-RAY DIFFRACTION24( CHAIN G AND RESID 391:474 )G391 - 474
25X-RAY DIFFRACTION25( CHAIN G AND RESID 475:531 )G475 - 531
26X-RAY DIFFRACTION26( CHAIN H AND RESID 2:228 )H2 - 228
27X-RAY DIFFRACTION27( CHAIN H AND RESID 229:450 )H229 - 450
28X-RAY DIFFRACTION28( CHAIN H AND RESID 451:530 )H451 - 530
29X-RAY DIFFRACTION29( CHAIN I AND RESID 2:122 )I2 - 122
30X-RAY DIFFRACTION30( CHAIN I AND RESID 123:208 )I123 - 208
31X-RAY DIFFRACTION31( CHAIN I AND RESID 209:277 )I209 - 277
32X-RAY DIFFRACTION32( CHAIN I AND RESID 278:390 )I278 - 390
33X-RAY DIFFRACTION33( CHAIN I AND RESID 391:474 )I391 - 474
34X-RAY DIFFRACTION34( CHAIN I AND RESID 475:530 )I475 - 530
35X-RAY DIFFRACTION35( CHAIN J AND RESID 2:208 )J2 - 208
36X-RAY DIFFRACTION36( CHAIN J AND RESID 209:266 )J209 - 266
37X-RAY DIFFRACTION37( CHAIN J AND RESID 267:474 )J267 - 474
38X-RAY DIFFRACTION38( CHAIN J AND RESID 475:536 )J475 - 536
39X-RAY DIFFRACTION39( CHAIN K AND RESID 2:78 )K2 - 78
40X-RAY DIFFRACTION40( CHAIN K AND RESID 79:208 )K79 - 208
41X-RAY DIFFRACTION41( CHAIN K AND RESID 209:244 )K209 - 244
42X-RAY DIFFRACTION42( CHAIN K AND RESID 245:474 )K245 - 474
43X-RAY DIFFRACTION43( CHAIN K AND RESID 475:532 )K475 - 532
44X-RAY DIFFRACTION44( CHAIN L AND RESID 2:50 )L2 - 50
45X-RAY DIFFRACTION45( CHAIN L AND RESID 51:159 )L51 - 159
46X-RAY DIFFRACTION46( CHAIN L AND RESID 160:237 )L160 - 237
47X-RAY DIFFRACTION47( CHAIN L AND RESID 238:372 )L238 - 372
48X-RAY DIFFRACTION48( CHAIN L AND RESID 373:474 )L373 - 474
49X-RAY DIFFRACTION49( CHAIN L AND RESID 475:530 )L475 - 530

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