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Open data
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Basic information
Entry | Database: PDB / ID: 8cn7 | ||||||
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Title | Pa.FabF-C164Q in complex with platencin | ||||||
![]() | 3-oxoacyl-[acyl-carrier-protein] synthase 2 | ||||||
![]() | TRANSFERASE / inhibitor / FabF / complex / platencin / antibiotic | ||||||
Function / homology | ![]() beta-ketoacyl-[acyl-carrier-protein] synthase II / 3-oxoacyl-[acyl-carrier-protein] synthase activity / fatty acid biosynthetic process / metal ion binding / cytosol Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Georgiou, C. / Brenk, R. | ||||||
Funding support | ![]()
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![]() | ![]() Title: New starting points for antibiotics targeting P. aeruginosa FabF discovered by crystallographic fragment screening followed by hit expansion Authors: Georgiou, C. / Espeland, L.O. / Bukya, H. / Yadrykhinsky, V. / Haug, B.E. / Mainkar, P. / Brenk, R. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 170.9 KB | Display | ![]() |
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PDB format | ![]() | 134.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1 MB | Display | ![]() |
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Full document | ![]() | 1 MB | Display | |
Data in XML | ![]() | 31.3 KB | Display | |
Data in CIF | ![]() | 44.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 8cn2C ![]() 8cn4C ![]() 8cn5C ![]() 8cn8C ![]() 8cneC ![]() 8cngC ![]() 8couC ![]() 8covC ![]() 8pd1C ![]() 8pfzC ![]() 8qerC ![]() 8qm1C C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 43322.715 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() References: UniProt: G3XDA2, beta-ketoacyl-[acyl-carrier-protein] synthase II #2: Chemical | ChemComp-DMS / #3: Chemical | #4: Water | ChemComp-HOH / | Has ligand of interest | Y | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.15 Å3/Da / Density % sol: 42.92 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, sitting drop / Details: 0.20M ammonium formate and 31.2% PEG3350 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 2M / Detector: PIXEL / Date: Nov 26, 2020 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97625 Å / Relative weight: 1 |
Reflection | Resolution: 2.1→64.78 Å / Num. obs: 42000 / % possible obs: 97.3 % / Redundancy: 2.9 % / CC1/2: 0.996 / Rmerge(I) obs: 0.071 / Net I/σ(I): 9.5 |
Reflection shell | Resolution: 2.1→2.16 Å / Redundancy: 3 % / Rmerge(I) obs: 0.422 / Mean I/σ(I) obs: 2.2 / Num. unique obs: 3512 / CC1/2: 0.724 / % possible all: 99.4 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: BABINET MODEL WITH MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 33.42 Å2
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Refinement step | Cycle: 1 / Resolution: 2.1→50.69 Å
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Refine LS restraints |
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