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- PDB-7x5t: Structure of the C-terminal head domain of the fowl adenovirus ty... -
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Open data
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Basic information
Entry | Database: PDB / ID: 7x5t | ||||||
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Title | Structure of the C-terminal head domain of the fowl adenovirus type 4 fiber 1 | ||||||
![]() | Fiber-1 | ||||||
![]() | VIRAL PROTEIN / fiber / receptor binding | ||||||
Function / homology | Fiber protein 1, C-terminal / Fiber protein, C-terminal domain superfamily / C-terminal head domain of the fowl adenovirus type 1 long fibre / Avian adenovirus fibre, N-terminal / Avian adenovirus fibre, N-terminal / virion attachment to host cell / Fiber-1![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Song, Y.P. / Wei, Q. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Structure of the C-terminal head domain of the fowl adenovirus type 4 fiber 1 Authors: Song, Y.P. / Wei, Q. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 109.9 KB | Display | ![]() |
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PDB format | ![]() | Display | ![]() | |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 432.7 KB | Display | ![]() |
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Full document | ![]() | 435.1 KB | Display | |
Data in XML | ![]() | 12.1 KB | Display | |
Data in CIF | ![]() | 17.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 2iunS S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 27264.137 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.42 Å3/Da / Density % sol: 49.23 % |
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Crystal grow | Temperature: 293 K / Method: evaporation Details: 0.1M Na citrate tribasic dihydrate pH5.0, 30% PEG monomethyl ether 550 |
-Data collection
Diffraction | Mean temperature: 273 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARMOSAIC 225 mm CCD / Detector: CCD / Date: Dec 13, 2021 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9793 Å / Relative weight: 1 |
Reflection | Resolution: 1.65→47.65 Å / Num. obs: 33187 / % possible obs: 100 % / Redundancy: 75.7 % / Rmerge(I) obs: 0.128 / Net I/σ(I): 27.1 |
Reflection shell | Resolution: 1.65→1.68 Å / Rmerge(I) obs: 3.295 / Num. unique obs: 1575 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 2IUN Resolution: 1.65→47.65 Å / Cor.coef. Fo:Fc: 0.982 / Cor.coef. Fo:Fc free: 0.961 / SU B: 3.672 / SU ML: 0.054 / Cross valid method: THROUGHOUT / σ(F): 0 / ESU R: 0.083 / ESU R Free: 0.078 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso max: 92.1 Å2 / Biso mean: 30.582 Å2 / Biso min: 18.72 Å2
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Refinement step | Cycle: final / Resolution: 1.65→47.65 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.65→1.693 Å / Rfactor Rfree error: 0 / Total num. of bins used: 20
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