登録情報 | データベース: PDB / ID: 7w36 |
---|
タイトル | Crystal structure of human Atg5 complexed with a stapled peptide |
---|
要素 | - Autophagy protein 5オートファジー
- Stapled ATG16L1-derived peptide
|
---|
キーワード | LIGASE (リガーゼ) / Autophagy (オートファジー) / Inhibitor / Complex / Stapled peptide |
---|
機能・相同性 | 機能・相同性情報
otolith development / regulation of autophagosome maturation / response to fluoride / regulation of cytokine production involved in immune response / positive regulation of viral translation / Atg8-family ligase activity / Atg12-Atg5-Atg16 complex / antigen processing and presentation of endogenous antigen / C-terminal protein lipidation / phagophore ...otolith development / regulation of autophagosome maturation / response to fluoride / regulation of cytokine production involved in immune response / positive regulation of viral translation / Atg8-family ligase activity / Atg12-Atg5-Atg16 complex / antigen processing and presentation of endogenous antigen / C-terminal protein lipidation / phagophore / negative regulation of autophagic cell death / vacuole-isolation membrane contact site / positive regulation of stress granule assembly / cellular response to nitrosative stress / ubiquitin-like protein transferase activity / negative regulation of defense response to virus / ventricular cardiac muscle cell development / microautophagy / mitochondria-associated endoplasmic reticulum membrane contact site / regulation of cilium assembly / aggrephagy / transferase complex / mucus secretion / response to fungus / xenophagy / negative thymic T cell selection / corpus callosum development / protein localization to phagophore assembly site / phagophore assembly site membrane / piecemeal microautophagy of the nucleus / cellular response to nitrogen starvation / regulation of release of sequestered calcium ion into cytosol / negative stranded viral RNA replication / endolysosome membrane / response to iron(II) ion / negative regulation of phagocytosis / negative regulation of cardiac muscle cell apoptotic process / positive regulation of mucus secretion / negative regulation of type I interferon production / chaperone-mediated autophagy / オートファジー / Receptor Mediated Mitophagy / heart contraction / axoneme / autophagosome membrane / マイトファジー / autophagosome assembly / negative regulation of reactive oxygen species metabolic process / オートファゴソーム / blood vessel remodeling / positive regulation of autophagy / protein-membrane adaptor activity / cardiac muscle cell apoptotic process / negative regulation of protein ubiquitination / sperm midpiece / PINK1-PRKN Mediated Mitophagy / negative regulation of innate immune response / post-translational protein modification / establishment of localization in cell / Negative regulators of DDX58/IFIH1 signaling / hippocampus development / オートファジー / オートファジー / vasodilation / phagocytic vesicle membrane / protein transport / GTPase binding / chromatin organization / defense response to virus / protein ubiquitination / response to xenobiotic stimulus / 神経繊維 / protein-containing complex / 生体膜 / identical protein binding / 細胞質基質 / 細胞質類似検索 - 分子機能 : / : / : / Autophagy protein ATG5, alpha-helical bundle region / Autophagy protein ATG5, UblA domain / Autophagy-related protein 5 / Autophagy protein Atg5, helix rich domain / Autophagy protein Atg5, UblA domain / Autophagy protein ATG5, UblB domain / Autophagy-related protein 16 ...: / : / : / Autophagy protein ATG5, alpha-helical bundle region / Autophagy protein ATG5, UblA domain / Autophagy-related protein 5 / Autophagy protein Atg5, helix rich domain / Autophagy protein Atg5, UblA domain / Autophagy protein ATG5, UblB domain / Autophagy-related protein 16 / Autophagy-related protein 16 domain / Autophagy protein 16 (ATG16) / G-protein beta WD-40 repeat / WD40 repeat, conserved site / Trp-Asp (WD) repeats signature. / Trp-Asp (WD) repeats profile. / Trp-Asp (WD) repeats circular profile. / WD domain, G-beta repeat / WD40リピート / WD40リピート / WD40-repeat-containing domain superfamily / WD40/YVTN repeat-like-containing domain superfamily類似検索 - ドメイン・相同性 Autophagy-related protein 16-1 / Autophagy protein 5類似検索 - 構成要素 |
---|
生物種 | Homo sapiens (ヒト) |
---|
手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 3 Å |
---|
データ登録者 | Kurata, I. / Matoba, K. / Noda, N.N. |
---|
資金援助 | 2件 組織 | 認可番号 | 国 |
---|
Japan Society for the Promotion of Science (JSPS) | 19H05707 | | Japan Science and Technology | JPMJCR20E3 | |
|
---|
引用 | ジャーナル: J.Am.Chem.Soc. / 年: 2022 タイトル: Targeting the ATG5-ATG16L1 Protein-Protein Interaction with a Hydrocarbon-Stapled Peptide Derived from ATG16L1 for Autophagy Inhibition. 著者: Cui, J. / Ogasawara, Y. / Kurata, I. / Matoba, K. / Fujioka, Y. / Noda, N.N. / Shibasaki, M. / Watanabe, T. |
---|
履歴 | 登録 | 2021年11月25日 | 登録サイト: PDBJ / 処理サイト: PDBJ |
---|
改定 1.0 | 2022年9月21日 | Provider: repository / タイプ: Initial release |
---|
改定 1.1 | 2023年10月4日 | Group: Data collection / Database references カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / citation / citation_author Item: _citation.country / _citation.journal_abbrev ..._citation.country / _citation.journal_abbrev / _citation.journal_id_ASTM / _citation.journal_id_CSD / _citation.journal_id_ISSN / _citation.journal_volume / _citation.page_first / _citation.page_last / _citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed / _citation.title / _citation.year / _citation_author.identifier_ORCID / _citation_author.name |
---|
改定 1.2 | 2023年11月15日 | Group: Data collection / カテゴリ: chem_comp_atom / chem_comp_bond / Item: _chem_comp_atom.atom_id / _chem_comp_bond.atom_id_2 |
---|
改定 1.3 | 2023年11月29日 | Group: Refinement description / カテゴリ: pdbx_initial_refinement_model |
---|
|
---|