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- PDB-7u1n: Crystal structure of the Anopheles darlingi AD-118 long form D7 s... -
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Open data
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Basic information
Entry | Database: PDB / ID: 7u1n | ||||||
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Title | Crystal structure of the Anopheles darlingi AD-118 long form D7 salivary protein | ||||||
![]() | Long form D7 salivary protein | ||||||
![]() | BLOOD CLOTTING / odorant binding protein family / blood feeding | ||||||
Function / homology | response to stimulus / Pheromone/general odorant binding protein superfamily / odorant binding / sensory perception of smell / 2-ETHOXYETHANOL / DI(HYDROXYETHYL)ETHER / Long form D7 salivary protein![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Alvarenga, P.H. / Gittis, A.G. / Garboczi, D.N. / Andersen, J.F. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Functional aspects of evolution in a cluster of salivary protein genes from mosquitoes. Authors: Alvarenga, P.H. / Dias, D.R. / Xu, X. / Francischetti, I.M.B. / Gittis, A.G. / Arp, G. / Garboczi, D.N. / Ribeiro, J.M.C. / Andersen, J.F. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 138.5 KB | Display | ![]() |
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PDB format | ![]() | 102.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 7tvcC ![]() 7tvyC ![]() 7tx8C C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Components
-Protein , 1 types, 2 molecules AB
#1: Protein | Mass: 34892.090 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Production host: ![]() ![]() |
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-Non-polymers , 7 types, 137 molecules ![](data/chem/img/ETX.gif)
![](data/chem/img/SO4.gif)
![](data/chem/img/PG0.gif)
![](data/chem/img/GOL.gif)
![](data/chem/img/PEG.gif)
![](data/chem/img/EDO.gif)
![](data/chem/img/HOH.gif)
![](data/chem/img/SO4.gif)
![](data/chem/img/PG0.gif)
![](data/chem/img/GOL.gif)
![](data/chem/img/PEG.gif)
![](data/chem/img/EDO.gif)
![](data/chem/img/HOH.gif)
#2: Chemical | #3: Chemical | #4: Chemical | #5: Chemical | #6: Chemical | ChemComp-PEG / | #7: Chemical | ChemComp-EDO / | #8: Water | ChemComp-HOH / | |
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-Details
Has ligand of interest | N |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.43 Å3/Da / Density % sol: 49.32 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion / pH: 7.5 Details: 30%P EG 5000 MME, 0.2 M ammonium sulfate, 0.1M HEPES |
-Data collection
Diffraction | Mean temperature: 95 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU SATURN A200 / Detector: CCD / Date: Aug 12, 2020 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.54178 Å / Relative weight: 1 |
Reflection | Resolution: 2.4→29.39 Å / Num. obs: 24809 / % possible obs: 94.1 % / Redundancy: 4.78 % / Biso Wilson estimate: 27.19 Å2 / Rmerge(I) obs: 0.065 / Net I/σ(I): 15.77 |
Reflection shell | Resolution: 2.4→2.46 Å / Rmerge(I) obs: 0.284 / Num. unique obs: 1239 / % possible all: 63.4 |
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Processing
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Refinement | Method to determine structure: ![]() Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 30.84 Å2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.4→29.39 Å
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Refine LS restraints |
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LS refinement shell |
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