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Open data
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Basic information
Entry | Database: PDB / ID: 7t5t | ||||||
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Title | Structure of Thauera sp. K11 CapP | ||||||
![]() | CapP toxin | ||||||
![]() | HYDROLASE / Zinc metallopeptidase / IrrE / cysteine switch | ||||||
Function / homology | IrrE N-terminal-like domain / IrrE N-terminal-like domain / Toxin![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Lau, R.K. / Corbett, K.D. | ||||||
Funding support | ![]()
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![]() | ![]() Title: A conserved signaling pathway activates bacterial CBASS immune signaling in response to DNA damage. Authors: Lau, R.K. / Enustun, E. / Gu, Y. / Nguyen, J.V. / Corbett, K.D. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 215.5 KB | Display | ![]() |
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PDB format | ![]() | 144.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 446.6 KB | Display | ![]() |
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Full document | ![]() | 447.8 KB | Display | |
Data in XML | ![]() | 16.2 KB | Display | |
Data in CIF | ![]() | 24.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 7t5uC ![]() 7t5vC ![]() 7t5wC C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
Experimental dataset #1 | Data reference: ![]() |
Experimental dataset #2 | Data reference: ![]() Details: Selenomethionine-derivatized data (used for structure determination) Metadata reference: 10.15785/SBGRID/865 |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 32727.076 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() | ||||||||
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#2: Chemical | #3: Chemical | ChemComp-ZN / | #4: Chemical | #5: Water | ChemComp-HOH / | Has ligand of interest | N | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / Details: 0.1 M CHES pH 9.5, 1.8 M LiSO4, 0.3 M NaCl |
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-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Feb 14, 2020 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97892 Å / Relative weight: 1 |
Reflection | Resolution: 1.35→39.49 Å / Num. obs: 106052 / % possible obs: 99.8 % / Redundancy: 13.1 % / Biso Wilson estimate: 22.72 Å2 / CC1/2: 0.999 / Rmerge(I) obs: 0.058 / Rpim(I) all: 0.016 / Net I/σ(I): 18.7 |
Reflection shell | Resolution: 1.35→1.37 Å / Rmerge(I) obs: 2.884 / Mean I/σ(I) obs: 0.8 / Num. unique obs: 5070 / CC1/2: 0.443 / Rpim(I) all: 0.853 |
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Processing
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Refinement | Method to determine structure: ![]() Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 31.51 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.35→39.49 Å
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Refine LS restraints |
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LS refinement shell |
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