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- PDB-7r0g: STRUCTURAL BASIS OF ION UPTAKE IN COPPER-TRANSPORTING P1B-TYPE ATPASES -
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Open data
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Basic information
Entry | Database: PDB / ID: 7r0g | ||||||
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Title | STRUCTURAL BASIS OF ION UPTAKE IN COPPER-TRANSPORTING P1B-TYPE ATPASES | ||||||
![]() | Putative copper-exporting P-type ATPase A | ||||||
![]() | MEMBRANE PROTEIN / ATPase | ||||||
Function / homology | ![]() P-type divalent copper transporter activity / copper ion export / copper ion import / intracellular copper ion homeostasis / copper ion binding / ATP hydrolysis activity / ATP binding / plasma membrane Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Salustros, N. / Groenberg, C. / Wang, K. / Gourdon, P. | ||||||
Funding support | 1items
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![]() | ![]() Title: Structural basis of ion uptake in copper-transporting P 1B -type ATPases. Authors: Salustros, N. / Gronberg, C. / Abeyrathna, N.S. / Lyu, P. / Oradd, F. / Wang, K. / Andersson, M. / Meloni, G. / Gourdon, P. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 290.3 KB | Display | ![]() |
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PDB format | ![]() | 201.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 436.8 KB | Display | ![]() |
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Full document | ![]() | 467.1 KB | Display | |
Data in XML | ![]() | 47.7 KB | Display | |
Data in CIF | ![]() | 64.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 7r0hC ![]() 7r0iC ![]() 3rfuS S: Starting model for refinement C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 70411.086 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 4.11 Å3/Da / Density % sol: 70.05 % |
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Crystal grow | Temperature: 292 K / Method: vapor diffusion / Details: 1.5 M ammonium citrate, 0.1 M MES pH=5.5 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS EIGER X 16M / Detector: PIXEL / Date: Nov 20, 2019 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 4→50 Å / Num. obs: 36001 / % possible obs: 93.94 % / Redundancy: 8.4 % / Biso Wilson estimate: 191.11 Å2 / CC1/2: 0.996 / CC star: 0.999 / Rmerge(I) obs: 0.2057 / Rpim(I) all: 0.07477 / Rrim(I) all: 0.219 / Net I/σ(I): 6.88 |
Reflection shell | Resolution: 4.011→4.154 Å / Rmerge(I) obs: 3.855 / Mean I/σ(I) obs: 0.44 / Num. unique obs: 1863 / CC1/2: 0.996 / CC star: 0.503 / Rpim(I) all: 1.386 / Rrim(I) all: 4.099 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 3RFU Resolution: 4.01→48.75 Å / SU ML: 0.777 / Cross valid method: FREE R-VALUE / σ(F): 1.34 / Phase error: 37.3971 Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 196.93 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 4.01→48.75 Å
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Refine LS restraints |
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LS refinement shell |
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