+Open data
-Basic information
Entry | Database: PDB / ID: 7q6g | |||||||||
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Title | Xenorhabdus poinarii FtsA 1-396 ADP | |||||||||
Components | Cell division protein FtsA | |||||||||
Keywords | CELL CYCLE / Bacterial cell division / Divisome / Actin homologue | |||||||||
Function / homology | Function and homology information FtsZ-dependent cytokinesis / cell division site / cytoplasmic side of plasma membrane Similarity search - Function | |||||||||
Biological species | Xenorhabdus poinarii G6 (bacteria) | |||||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.8 Å | |||||||||
Authors | Nierhaus, T. / Kureisaite-Ciziene, D. / Lowe, J. | |||||||||
Funding support | United Kingdom, 2items
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Citation | Journal: Nat Microbiol / Year: 2022 Title: Bacterial divisome protein FtsA forms curved antiparallel double filaments when binding to FtsN. Authors: Nierhaus, T. / McLaughlin, S.H. / Burmann, F. / Kureisaite-Ciziene, D. / Maslen, S.L. / Skehel, J.M. / Yu, C.W.H. / Freund, S.M.V. / Funke, L.F.H. / Chin, J.W. / Lowe, J. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 7q6g.cif.gz | 87.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb7q6g.ent.gz | 64.1 KB | Display | PDB format |
PDBx/mmJSON format | 7q6g.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/q6/7q6g ftp://data.pdbj.org/pub/pdb/validation_reports/q6/7q6g | HTTPS FTP |
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-Related structure data
Related structure data | 7q6dSC 7q6fC 7q6iC S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data | Similarity search - Function & homologyF&H Search |
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 42509.465 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Xenorhabdus poinarii G6 (bacteria) / Gene: ftsA, XPG1_0684 / Production host: Escherichia coli (E. coli) / Strain (production host): CD41(DE3) / References: UniProt: A0A068QZX9 |
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#2: Chemical | ChemComp-ADP / |
#3: Chemical | ChemComp-MG / |
Has ligand of interest | Y |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.95 Å3/Da / Density % sol: 58.25 % |
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Crystal grow | Temperature: 294.15 K / Method: vapor diffusion, sitting drop Details: 1 M sodium succinate pH 7.0, 0.1 M bis-tris-propane pH 7.0 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N | ||||||||||||||||||||||||||||||
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Diffraction source | Source: SYNCHROTRON / Site: Diamond / Beamline: I04 / Wavelength: 1.00915 Å | ||||||||||||||||||||||||||||||
Detector | Type: DECTRIS EIGER2 XE 16M / Detector: PIXEL / Date: Sep 14, 2019 | ||||||||||||||||||||||||||||||
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | ||||||||||||||||||||||||||||||
Radiation wavelength | Wavelength: 1.00915 Å / Relative weight: 1 | ||||||||||||||||||||||||||||||
Reflection | Resolution: 2.8→40.85 Å / Num. obs: 12283 / % possible obs: 99.9 % / Redundancy: 3.4 % / CC1/2: 0.796 / Rmerge(I) obs: 0.257 / Rpim(I) all: 0.165 / Rrim(I) all: 0.306 / Net I/σ(I): 4.4 / Num. measured all: 41563 / Scaling rejects: 82 | ||||||||||||||||||||||||||||||
Reflection shell | Diffraction-ID: 1
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-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT Starting model: 7Q6D Resolution: 2.8→40.83 Å / SU ML: 0.45 / Cross valid method: THROUGHOUT / σ(F): 0.06 / Phase error: 28.92 / Stereochemistry target values: ML
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso max: 110.86 Å2 / Biso mean: 41.7795 Å2 / Biso min: 13.17 Å2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: final / Resolution: 2.8→40.83 Å
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LS refinement shell | Refine-ID: X-RAY DIFFRACTION / Rfactor Rfree error: 0 / Total num. of bins used: 8
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