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- PDB-7p2h: Dimethylated fusion protein of RSL and mussel adhesion peptide (M... -
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Open data
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Basic information
Entry | Database: PDB / ID: 7p2h | |||||||||
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Title | Dimethylated fusion protein of RSL and mussel adhesion peptide (Mefp) in complex with cucurbit[7]uril, H3 sheet assembly | |||||||||
![]() | Fucose-binding lectin protein | |||||||||
![]() | SUGAR BINDING PROTEIN / ![]() ![]() ![]() ![]() | |||||||||
Function / homology | Fucose-specific lectin / ![]() ![]() ![]() | |||||||||
Biological species | ![]() ![]() | |||||||||
Method | ![]() ![]() ![]() | |||||||||
![]() | Ramberg, K. / Engilberge, S. / Crowley, P.B. | |||||||||
Funding support | ![]()
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![]() | ![]() Title: Segregated Protein-Cucurbit[7]uril Crystalline Architectures via Modulatory Peptide Tectons. Authors: Ramberg, K.O. / Guagnini, F. / Engilberge, S. / Wronska, M.A. / Rennie, M.L. / Perez, J. / Crowley, P.B. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 58.9 KB | Display | ![]() |
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PDB format | ![]() | 41.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 6s99C ![]() 7p2iC ![]() 7p2jC ![]() 2bt9S C: citing same article ( S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 10730.778 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Gene: E7Z57_08365, HXP36_18875, RSP795_21825, RSP822_19650, RUN39_v1_50103 Production host: ![]() ![]() ![]() #2: Chemical | #3: Chemical | ChemComp-GOL / ![]() #4: Chemical | #5: Water | ChemComp-HOH / | ![]() Has ligand of interest | Y | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.22 Å3/Da / Density % sol: 61.81 % |
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Crystal grow![]() | Temperature: 293 K / Method: vapor diffusion, hanging drop Details: 15 % PEG 10000 0.1 M Bis-Tris pH 5.5 0.2 M MgCl2 4 mM Q7 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS EIGER X 9M / Detector: PIXEL / Date: Jul 25, 2020 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 2.149→43.63 Å / Num. obs: 14627 / % possible obs: 100 % / Redundancy: 10.3 % / Biso Wilson estimate: 37.38 Å2 / CC1/2: 0.99 / Rpim(I) all: 0.035 / Rsym value: 0.112 / Net I/σ(I): 12.3 |
Reflection shell | Resolution: 2.15→2.19 Å / Redundancy: 10.5 % / Mean I/σ(I) obs: 2.4 / Num. unique obs: 733 / CC1/2: 0.9 / Rpim(I) all: 0.313 / Rrim(I) all: 1 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure![]() ![]() Starting model: 2BT9 Resolution: 2.15→43.63 Å / SU ML: 0.24 / Cross valid method: THROUGHOUT / σ(F): 2.86 / Phase error: 27.7 / Stereochemistry target values: ML
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso max: 78.87 Å2 / Biso mean: 43.721 Å2 / Biso min: 28.54 Å2 | ||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: final / Resolution: 2.15→43.63 Å
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LS refinement shell | Refine-ID: X-RAY DIFFRACTION / Rfactor Rfree error: 0 / Total num. of bins used: 5 / % reflection obs: 100 %
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