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- PDB-7mk5: Crystal structure of Escherichia coli ClpP covalently inhibited b... -

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基本情報

登録情報
データベース: PDB / ID: 7mk5
タイトルCrystal structure of Escherichia coli ClpP covalently inhibited by clipibicyclene
要素ATP-dependent Clp protease proteolytic subunit
キーワードHYDROLASE/HYDROLASE inhibitor / Inhibitor / Complex / Protease / HYDROLASE / HYDROLASE-HYDROLASE inhibitor complex
機能・相同性
機能・相同性情報


HslUV protease complex / endopeptidase Clp / endopeptidase Clp complex / positive regulation of programmed cell death / response to temperature stimulus / protein quality control for misfolded or incompletely synthesized proteins / ATP-dependent peptidase activity / proteasomal protein catabolic process / serine-type peptidase activity / response to radiation ...HslUV protease complex / endopeptidase Clp / endopeptidase Clp complex / positive regulation of programmed cell death / response to temperature stimulus / protein quality control for misfolded or incompletely synthesized proteins / ATP-dependent peptidase activity / proteasomal protein catabolic process / serine-type peptidase activity / response to radiation / ATPase binding / response to heat / serine-type endopeptidase activity / proteolysis / identical protein binding / membrane / cytosol
類似検索 - 分子機能
ClpP, Ser active site / Endopeptidase Clp serine active site. / ClpP, histidine active site / Endopeptidase Clp histidine active site. / ATP-dependent Clp protease proteolytic subunit / Clp protease proteolytic subunit /Translocation-enhancing protein TepA / Clp protease / ClpP/crotonase-like domain superfamily
類似検索 - ドメイン・相同性
ACETATE ION / Chem-ZGV / ATP-dependent Clp protease proteolytic subunit
類似検索 - 構成要素
生物種Escherichia coli K-12 (大腸菌)
手法X線回折 / シンクロトロン / 分子置換 / 解像度: 2.95 Å
データ登録者Culp, E.J. / Sychantha, D. / Hobson, C. / Pawlowski, A.J. / Prehna, G. / Wright, G.D.
資金援助 カナダ, 1件
組織認可番号
Canadian Institutes of Health Research (CIHR)FRN-148463 カナダ
引用ジャーナル: Nat Microbiol / : 2022
タイトル: ClpP inhibitors are produced by a widespread family of bacterial gene clusters.
著者: Culp, E.J. / Sychantha, D. / Hobson, C. / Pawlowski, A.C. / Prehna, G. / Wright, G.D.
履歴
登録2021年4月21日登録サイト: RCSB / 処理サイト: RCSB
改定 1.02022年2月2日Provider: repository / タイプ: Initial release
改定 1.12022年11月16日Group: Database references / カテゴリ: citation / citation_author
Item: _citation.country / _citation.journal_abbrev ..._citation.country / _citation.journal_abbrev / _citation.journal_id_CSD / _citation.journal_id_ISSN / _citation.journal_volume / _citation.page_first / _citation.page_last / _citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed / _citation.title / _citation.year / _citation_author.identifier_ORCID / _citation_author.name
改定 1.22024年4月3日Group: Data collection / Refinement description
カテゴリ: chem_comp_atom / chem_comp_bond / pdbx_initial_refinement_model
改定 1.32024年10月30日Group: Structure summary
カテゴリ: pdbx_entry_details / pdbx_modification_feature
Item: _pdbx_entry_details.has_protein_modification

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

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集合体

登録構造単位
A: ATP-dependent Clp protease proteolytic subunit
B: ATP-dependent Clp protease proteolytic subunit
C: ATP-dependent Clp protease proteolytic subunit
D: ATP-dependent Clp protease proteolytic subunit
E: ATP-dependent Clp protease proteolytic subunit
F: ATP-dependent Clp protease proteolytic subunit
G: ATP-dependent Clp protease proteolytic subunit
H: ATP-dependent Clp protease proteolytic subunit
I: ATP-dependent Clp protease proteolytic subunit
J: ATP-dependent Clp protease proteolytic subunit
K: ATP-dependent Clp protease proteolytic subunit
L: ATP-dependent Clp protease proteolytic subunit
M: ATP-dependent Clp protease proteolytic subunit
N: ATP-dependent Clp protease proteolytic subunit
O: ATP-dependent Clp protease proteolytic subunit
P: ATP-dependent Clp protease proteolytic subunit
Q: ATP-dependent Clp protease proteolytic subunit
R: ATP-dependent Clp protease proteolytic subunit
S: ATP-dependent Clp protease proteolytic subunit
T: ATP-dependent Clp protease proteolytic subunit
U: ATP-dependent Clp protease proteolytic subunit
V: ATP-dependent Clp protease proteolytic subunit
W: ATP-dependent Clp protease proteolytic subunit
X: ATP-dependent Clp protease proteolytic subunit
Y: ATP-dependent Clp protease proteolytic subunit
Z: ATP-dependent Clp protease proteolytic subunit
a: ATP-dependent Clp protease proteolytic subunit
b: ATP-dependent Clp protease proteolytic subunit
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)620,630116
ポリマ-604,43228
非ポリマー16,19888
1,856103
1
A: ATP-dependent Clp protease proteolytic subunit
B: ATP-dependent Clp protease proteolytic subunit
C: ATP-dependent Clp protease proteolytic subunit
D: ATP-dependent Clp protease proteolytic subunit
E: ATP-dependent Clp protease proteolytic subunit
F: ATP-dependent Clp protease proteolytic subunit
G: ATP-dependent Clp protease proteolytic subunit
H: ATP-dependent Clp protease proteolytic subunit
I: ATP-dependent Clp protease proteolytic subunit
J: ATP-dependent Clp protease proteolytic subunit
K: ATP-dependent Clp protease proteolytic subunit
L: ATP-dependent Clp protease proteolytic subunit
M: ATP-dependent Clp protease proteolytic subunit
N: ATP-dependent Clp protease proteolytic subunit
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)310,37459
ポリマ-302,21614
非ポリマー8,15845
25214
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area67090 Å2
ΔGint-607 kcal/mol
Surface area87590 Å2
手法PISA
2
O: ATP-dependent Clp protease proteolytic subunit
P: ATP-dependent Clp protease proteolytic subunit
Q: ATP-dependent Clp protease proteolytic subunit
R: ATP-dependent Clp protease proteolytic subunit
S: ATP-dependent Clp protease proteolytic subunit
T: ATP-dependent Clp protease proteolytic subunit
U: ATP-dependent Clp protease proteolytic subunit
V: ATP-dependent Clp protease proteolytic subunit
W: ATP-dependent Clp protease proteolytic subunit
X: ATP-dependent Clp protease proteolytic subunit
Y: ATP-dependent Clp protease proteolytic subunit
Z: ATP-dependent Clp protease proteolytic subunit
a: ATP-dependent Clp protease proteolytic subunit
b: ATP-dependent Clp protease proteolytic subunit
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)310,25657
ポリマ-302,21614
非ポリマー8,04043
25214
タイプ名称対称操作
identity operation1_555x,y,z1
Buried area65420 Å2
ΔGint-598 kcal/mol
Surface area87980 Å2
手法PISA
単位格子
Length a, b, c (Å)94.331, 190.230, 169.884
Angle α, β, γ (deg.)90.000, 93.612, 90.000
Int Tables number4
Space group name H-MP1211
Space group name HallP2yb
非結晶学的対称性 (NCS)NCSドメイン:
IDEns-ID詳細
d_1ens_1(chain "A" and (resid 18 through 21 or (resid 23...
d_2ens_1(chain "C" and (resid 18 through 21 or (resid 23...
d_3ens_1(chain "D" and (resid 18 through 21 or (resid 23...
d_4ens_1(chain "F" and (resid 18 through 21 or (resid 23...
d_5ens_1(chain "G" and (resid 18 through 21 or (resid 23...
d_6ens_1(chain "H" and (resid 18 through 21 or (resid 23...
d_7ens_1(chain "I" and (resid 18 through 21 or (resid 23...
d_8ens_1(chain "K" and (resid 18 through 21 or (resid 23...
d_9ens_1(chain "L" and (resid 18 through 21 or (resid 23...
d_10ens_1(chain "M" and (resid 18 through 21 or (resid 23...
d_11ens_1(chain "N" and (resid 18 through 21 or (resid 23...
d_12ens_1(chain "O" and (resid 18 through 21 or (resid 23...
d_13ens_1(chain "P" and (resid 18 through 21 or (resid 23...
d_14ens_1(chain "S" and (resid 18 through 21 or (resid 23...
d_15ens_1(chain "T" and (resid 18 through 21 or (resid 23...
d_16ens_1(chain "U" and (resid 18 through 21 or (resid 23...
d_17ens_1(chain "V" and (resid 18 through 21 or (resid 23...
d_18ens_1(chain "Y" and (resid 18 through 21 or (resid 23...
d_19ens_1(chain "a" and (resid 18 through 21 or (resid 23...
d_20ens_1(chain "b" and (resid 18 through 21 or (resid 23...
d_1ens_2(chain "B" and (resid 18 through 21 or resid 23...
d_2ens_2(chain "E" and (resid 18 through 21 or resid 23...
d_3ens_2(chain "J" and (resid 18 through 21 or resid 23...
d_4ens_2(chain "Q" and (resid 18 through 21 or resid 23...
d_5ens_2(chain "R" and (resid 18 through 21 or resid 23...
d_6ens_2(chain "W" and (resid 18 through 21 or resid 23...
d_7ens_2(chain "X" and (resid 18 through 21 or resid 23...
d_8ens_2(chain "Z" and (resid 18 through 21 or resid 23...

NCSドメイン領域:
Dom-IDComponent-IDEns-IDBeg label comp-IDEnd label comp-IDLabel asym-IDLabel seq-ID
d_11ens_1ASPSERA7 - 10
d_12ens_1LEULEUA12 - 13
d_13ens_1ARGGLYA16 - 22
d_14ens_1VALPROA24 - 44
d_15ens_1ASPILEA47 - 72
d_16ens_1PROALAA74 - 85
d_17ens_1METALAA87 - 96
d_18ens_1GLYSERA98 - 106
d_19ens_1VALALAA108 - 128
d_110ens_1GLULEUA130 - 132
d_111ens_1VALGLYA134 - 136
d_112ens_1METLEUA138 - 150
d_113ens_1GLNGLUA152 - 154
d_114ens_1ASPASPA156 - 160
d_115ens_1PHEVALA162 - 169
d_116ens_1TYRLEUA171 - 178
d_21ens_1ASPSERC6 - 9
d_22ens_1LEULEUC11 - 12
d_23ens_1ARGGLYC15 - 21
d_24ens_1VALPROC23 - 43
d_25ens_1ASPILEC46 - 71
d_26ens_1PROALAC73 - 84
d_27ens_1METALAC86 - 95
d_28ens_1GLYSERC97 - 105
d_29ens_1VALALAC107 - 127
d_210ens_1GLULEUC129 - 131
d_211ens_1VALGLYC133 - 135
d_212ens_1METLEUC137 - 149
d_213ens_1GLNGLUC151 - 153
d_214ens_1ASPASPC155 - 159
d_215ens_1PHEVALC161 - 168
d_216ens_1TYRLEUC170 - 177
d_31ens_1ASPSERD7 - 10
d_32ens_1LEULEUD12 - 13
d_33ens_1ARGGLYD16 - 22
d_34ens_1VALPROD24 - 44
d_35ens_1ASPILED47 - 72
d_36ens_1PROALAD74 - 85
d_37ens_1METALAD87 - 96
d_38ens_1GLYSERD98 - 106
d_39ens_1VALALAD108 - 128
d_310ens_1GLULEUD130 - 132
d_311ens_1VALGLYD134 - 136
d_312ens_1METLEUD138 - 150
d_313ens_1GLNGLUD152 - 154
d_314ens_1ASPASPD156 - 160
d_315ens_1PHEVALD162 - 169
d_316ens_1TYRLEUD171 - 178
d_41ens_1ASPSERF5 - 8
d_42ens_1LEULEUF10 - 11
d_43ens_1ARGGLYF14 - 20
d_44ens_1VALPROF22 - 42
d_45ens_1ASPILEF45 - 70
d_46ens_1PROALAF72 - 83
d_47ens_1METALAF85 - 94
d_48ens_1GLYSERF96 - 104
d_49ens_1VALALAF106 - 126
d_410ens_1GLULEUF128 - 130
d_411ens_1VALGLYF132 - 134
d_412ens_1METLEUF136 - 148
d_413ens_1GLNGLUF150 - 152
d_414ens_1ASPASPF154 - 158
d_415ens_1PHEVALF160 - 167
d_416ens_1TYRLEUF169 - 176
d_51ens_1ASPSERG5 - 8
d_52ens_1LEULEUG10 - 11
d_53ens_1ARGGLYG14 - 20
d_54ens_1VALPROG22 - 42
d_55ens_1ASPILEG45 - 70
d_56ens_1PROALAG72 - 83
d_57ens_1METALAG85 - 94
d_58ens_1GLYSERG96 - 104
d_59ens_1VALALAG106 - 126
d_510ens_1GLULEUG128 - 130
d_511ens_1VALGLYG132 - 134
d_512ens_1METLEUG136 - 148
d_513ens_1GLNGLUG150 - 152
d_514ens_1ASPASPG154 - 158
d_515ens_1PHEVALG160 - 167
d_516ens_1TYRLEUG169 - 176
d_61ens_1ASPSERH2 - 5
d_62ens_1LEULEUH7 - 8
d_63ens_1ARGGLYH11 - 17
d_64ens_1VALPROH19 - 39
d_65ens_1ASPILEH42 - 67
d_66ens_1PROALAH69 - 80
d_67ens_1METALAH82 - 91
d_68ens_1GLYSERH93 - 101
d_69ens_1VALALAH103 - 123
d_610ens_1GLULEUH125 - 127
d_611ens_1VALGLYH129 - 131
d_612ens_1METLEUH133 - 145
d_613ens_1GLNGLUH147 - 149
d_614ens_1ASPASPH151 - 155
d_615ens_1PHEVALH157 - 164
d_616ens_1TYRLEUH166 - 173
d_71ens_1ASPSERI6 - 9
d_72ens_1LEULEUI11 - 12
d_73ens_1ARGGLYI15 - 21
d_74ens_1VALPROI23 - 43
d_75ens_1ASPILEI46 - 71
d_76ens_1PROALAI73 - 84
d_77ens_1METALAI86 - 95
d_78ens_1GLYSERI97 - 105
d_79ens_1VALALAI107 - 127
d_710ens_1GLULEUI129 - 131
d_711ens_1VALGLYI133 - 135
d_712ens_1METLEUI137 - 149
d_713ens_1GLNGLUI151 - 153
d_714ens_1ASPASPI155 - 159
d_715ens_1PHEVALI161 - 168
d_716ens_1TYRLEUI170 - 177
d_81ens_1ASPSERK4 - 7
d_82ens_1LEULEUK9 - 10
d_83ens_1ARGGLYK13 - 19
d_84ens_1VALPROK21 - 41
d_85ens_1ASPILEK44 - 69
d_86ens_1PROALAK71 - 82
d_87ens_1METALAK84 - 93
d_88ens_1GLYSERK95 - 103
d_89ens_1VALALAK105 - 125
d_810ens_1GLULEUK127 - 129
d_811ens_1VALGLYK131 - 133
d_812ens_1METLEUK135 - 147
d_813ens_1GLNGLUK149 - 151
d_814ens_1ASPASPK153 - 157
d_815ens_1PHEVALK159 - 166
d_816ens_1TYRLEUK168 - 175
d_91ens_1ASPSERL5 - 8
d_92ens_1LEULEUL10 - 11
d_93ens_1ARGGLYL14 - 20
d_94ens_1VALPROL22 - 42
d_95ens_1ASPILEL45 - 70
d_96ens_1PROALAL72 - 83
d_97ens_1METALAL85 - 94
d_98ens_1GLYSERL96 - 104
d_99ens_1VALALAL106 - 126
d_910ens_1GLULEUL128 - 130
d_911ens_1VALGLYL132 - 134
d_912ens_1METLEUL136 - 148
d_913ens_1GLNGLUL150 - 152
d_914ens_1ASPASPL154 - 158
d_915ens_1PHEVALL160 - 167
d_916ens_1TYRLEUL169 - 176
d_101ens_1ASPSERM5 - 8
d_102ens_1LEULEUM10 - 11
d_103ens_1ARGGLYM14 - 20
d_104ens_1VALPROM22 - 42
d_105ens_1ASPILEM45 - 70
d_106ens_1PROALAM72 - 83
d_107ens_1METALAM85 - 94
d_108ens_1GLYSERM96 - 104
d_109ens_1VALALAM106 - 126
d_1010ens_1GLULEUM128 - 130
d_1011ens_1VALGLYM132 - 134
d_1012ens_1METLEUM136 - 148
d_1013ens_1GLNGLUM150 - 152
d_1014ens_1ASPASPM154 - 158
d_1015ens_1PHEVALM160 - 167
d_1016ens_1TYRLEUM169 - 176
d_111ens_1ASPSERN6 - 9
d_112ens_1LEULEUN11 - 12
d_113ens_1ARGGLYN15 - 21
d_114ens_1VALPRON23 - 43
d_115ens_1ASPILEN46 - 71
d_116ens_1PROALAN73 - 84
d_117ens_1METALAN86 - 95
d_118ens_1GLYSERN97 - 105
d_119ens_1VALALAN107 - 127
d_1110ens_1GLULEUN129 - 131
d_1111ens_1VALGLYN133 - 135
d_1112ens_1METLEUN137 - 149
d_1113ens_1GLNGLUN151 - 153
d_1114ens_1ASPASPN155 - 159
d_1115ens_1PHEVALN161 - 168
d_1116ens_1TYRLEUN170 - 177
d_121ens_1ASPSERO6 - 9
d_122ens_1LEULEUO11 - 12
d_123ens_1ARGGLYO15 - 21
d_124ens_1VALPROO23 - 43
d_125ens_1ASPILEO46 - 71
d_126ens_1PROALAO73 - 84
d_127ens_1METALAO86 - 95
d_128ens_1GLYSERO97 - 105
d_129ens_1VALALAO107 - 127
d_1210ens_1GLULEUO129 - 131
d_1211ens_1VALGLYO133 - 135
d_1212ens_1METLEUO137 - 149
d_1213ens_1GLNGLUO151 - 153
d_1214ens_1ASPASPO155 - 159
d_1215ens_1PHEVALO161 - 168
d_1216ens_1TYRLEUO170 - 177
d_131ens_1ASPSERP7 - 10
d_132ens_1LEULEUP12 - 13
d_133ens_1ARGGLYP16 - 22
d_134ens_1VALPROP24 - 44
d_135ens_1ASPILEP47 - 72
d_136ens_1PROALAP74 - 85
d_137ens_1METALAP87 - 96
d_138ens_1GLYSERP98 - 106
d_139ens_1VALALAP108 - 128
d_1310ens_1GLULEUP130 - 132
d_1311ens_1VALGLYP134 - 136
d_1312ens_1METLEUP138 - 150
d_1313ens_1GLNGLUP152 - 154
d_1314ens_1ASPASPP156 - 160
d_1315ens_1PHEVALP162 - 169
d_1316ens_1TYRLEUP171 - 178
d_141ens_1ASPSERS6 - 9
d_142ens_1LEULEUS11 - 12
d_143ens_1ARGGLYS15 - 21
d_144ens_1VALPROS23 - 43
d_145ens_1ASPILES46 - 71
d_146ens_1PROALAS73 - 84
d_147ens_1METALAS86 - 95
d_148ens_1GLYSERS97 - 105
d_149ens_1VALALAS107 - 127
d_1410ens_1GLULEUS129 - 131
d_1411ens_1VALGLYS133 - 135
d_1412ens_1METLEUS137 - 149
d_1413ens_1GLNGLUS151 - 153
d_1414ens_1ASPASPS155 - 159
d_1415ens_1PHEVALS161 - 168
d_1416ens_1TYRLEUS170 - 177
d_151ens_1ASPSERT5 - 8
d_152ens_1LEULEUT10 - 11
d_153ens_1ARGGLYT14 - 20
d_154ens_1VALPROT22 - 42
d_155ens_1ASPILET45 - 70
d_156ens_1PROALAT72 - 83
d_157ens_1METALAT85 - 94
d_158ens_1GLYSERT96 - 104
d_159ens_1VALALAT106 - 126
d_1510ens_1GLULEUT128 - 130
d_1511ens_1VALGLYT132 - 134
d_1512ens_1METLEUT136 - 148
d_1513ens_1GLNGLUT150 - 152
d_1514ens_1ASPASPT154 - 158
d_1515ens_1PHEVALT160 - 167
d_1516ens_1TYRLEUT169 - 176
d_161ens_1ASPSERU5 - 8
d_162ens_1LEULEUU10 - 11
d_163ens_1ARGGLYU14 - 20
d_164ens_1VALPROU22 - 42
d_165ens_1ASPILEU45 - 70
d_166ens_1PROALAU72 - 83
d_167ens_1METALAU85 - 94
d_168ens_1GLYSERU96 - 104
d_169ens_1VALALAU106 - 126
d_1610ens_1GLULEUU128 - 130
d_1611ens_1VALGLYU132 - 134
d_1612ens_1METLEUU136 - 148
d_1613ens_1GLNGLUU150 - 152
d_1614ens_1ASPASPU154 - 158
d_1615ens_1PHEVALU160 - 167
d_1616ens_1TYRLEUU169 - 176
d_171ens_1ASPSERV6 - 9
d_172ens_1LEULEUV11 - 12
d_173ens_1ARGGLYV15 - 21
d_174ens_1VALPROV23 - 43
d_175ens_1ASPILEV46 - 71
d_176ens_1PROALAV73 - 84
d_177ens_1METALAV86 - 95
d_178ens_1GLYSERV97 - 105
d_179ens_1VALALAV107 - 127
d_1710ens_1GLULEUV129 - 131
d_1711ens_1VALGLYV133 - 135
d_1712ens_1METLEUV137 - 149
d_1713ens_1GLNGLUV151 - 153
d_1714ens_1ASPASPV155 - 159
d_1715ens_1PHEVALV161 - 168
d_1716ens_1TYRLEUV170 - 177
d_181ens_1ASPSERY5 - 8
d_182ens_1LEULEUY10 - 11
d_183ens_1ARGGLYY14 - 20
d_184ens_1VALPROY22 - 42
d_185ens_1ASPILEY45 - 70
d_186ens_1PROALAY72 - 83
d_187ens_1METALAY85 - 94
d_188ens_1GLYSERY96 - 104
d_189ens_1VALALAY106 - 126
d_1810ens_1GLULEUY128 - 130
d_1811ens_1VALGLYY132 - 134
d_1812ens_1METLEUY136 - 148
d_1813ens_1GLNGLUY150 - 152
d_1814ens_1ASPASPY154 - 158
d_1815ens_1PHEVALY160 - 167
d_1816ens_1TYRLEUY169 - 176
d_191ens_1ASPSERAA4 - 7
d_192ens_1LEULEUAA9 - 10
d_193ens_1ARGGLYAA13 - 19
d_194ens_1VALPROAA21 - 41
d_195ens_1ASPILEAA44 - 69
d_196ens_1PROALAAA71 - 82
d_197ens_1METALAAA84 - 93
d_198ens_1GLYSERAA95 - 103
d_199ens_1VALALAAA105 - 125
d_1910ens_1GLULEUAA127 - 129
d_1911ens_1VALGLYAA131 - 133
d_1912ens_1METLEUAA135 - 147
d_1913ens_1GLNGLUAA149 - 151
d_1914ens_1ASPASPAA153 - 157
d_1915ens_1PHEVALAA159 - 166
d_1916ens_1TYRLEUAA168 - 175
d_201ens_1ASPSERBA6 - 9
d_202ens_1LEULEUBA11 - 12
d_203ens_1ARGGLYBA15 - 21
d_204ens_1VALPROBA23 - 43
d_205ens_1ASPILEBA46 - 71
d_206ens_1PROALABA73 - 84
d_207ens_1METALABA86 - 95
d_208ens_1GLYSERBA97 - 105
d_209ens_1VALALABA107 - 127
d_2010ens_1GLULEUBA129 - 131
d_2011ens_1VALGLYBA133 - 135
d_2012ens_1METLEUBA137 - 149
d_2013ens_1GLNGLUBA151 - 153
d_2014ens_1ASPASPBA155 - 159
d_2015ens_1PHEVALBA161 - 168
d_2016ens_1TYRLEUBA170 - 177
d_11ens_2ASPSERB7 - 10
d_12ens_2LEULEUB12 - 13
d_13ens_2ARGGLYB16 - 22
d_14ens_2VALPROB24 - 44
d_15ens_2LYSALAB46 - 85
d_16ens_2METALAB87 - 96
d_17ens_2GLYALAB98 - 128
d_18ens_2GLULEUB130 - 150
d_19ens_2GLNGLUB152 - 154
d_110ens_2ASPASPB156 - 160
d_111ens_2PHEVALB162 - 169
d_112ens_2TYRTHRB171 - 179
d_21ens_2ASPSERE7 - 10
d_22ens_2LEULEUE12 - 13
d_23ens_2ARGGLYE16 - 22
d_24ens_2VALPROE24 - 44
d_25ens_2LYSALAE46 - 85
d_26ens_2METALAE87 - 96
d_27ens_2GLYALAE98 - 128
d_28ens_2GLULEUE130 - 150
d_29ens_2GLNGLUE152 - 154
d_210ens_2ASPASPE156 - 160
d_211ens_2PHEVALE162 - 169
d_212ens_2TYRTHRE171 - 179
d_31ens_2ASPSERJ6 - 9
d_32ens_2LEULEUJ11 - 12
d_33ens_2ARGGLYJ15 - 21
d_34ens_2VALPROJ23 - 43
d_35ens_2LYSALAJ45 - 84
d_36ens_2METALAJ86 - 95
d_37ens_2GLYALAJ97 - 127
d_38ens_2GLULEUJ129 - 149
d_39ens_2GLNGLUJ151 - 153
d_310ens_2ASPASPJ155 - 159
d_311ens_2PHEVALJ161 - 168
d_312ens_2TYRTHRJ170 - 178
d_41ens_2ASPSERQ8 - 11
d_42ens_2LEULEUQ13 - 14
d_43ens_2ARGGLYQ17 - 23
d_44ens_2VALPROQ25 - 45
d_45ens_2LYSALAQ47 - 86
d_46ens_2METALAQ88 - 97
d_47ens_2GLYALAQ99 - 129
d_48ens_2GLULEUQ131 - 151
d_49ens_2GLNGLUQ153 - 155
d_410ens_2ASPASPQ157 - 161
d_411ens_2PHEVALQ163 - 170
d_412ens_2TYRTHRQ172 - 180
d_51ens_2ASPSERR7 - 10
d_52ens_2LEULEUR12 - 13
d_53ens_2ARGGLYR16 - 22
d_54ens_2VALPROR24 - 44
d_55ens_2LYSALAR46 - 85
d_56ens_2METALAR87 - 96
d_57ens_2GLYALAR98 - 128
d_58ens_2GLULEUR130 - 150
d_59ens_2GLNGLUR152 - 154
d_510ens_2ASPASPR156 - 160
d_511ens_2PHEVALR162 - 169
d_512ens_2TYRTHRR171 - 179
d_61ens_2ASPSERW1 - 4
d_62ens_2LEULEUW6 - 7
d_63ens_2ARGGLYW10 - 16
d_64ens_2VALPROW18 - 38
d_65ens_2LYSALAW40 - 79
d_66ens_2METALAW81 - 90
d_67ens_2GLYALAW92 - 122
d_68ens_2GLULEUW124 - 144
d_69ens_2GLNGLUW146 - 148
d_610ens_2ASPASPW150 - 154
d_611ens_2PHEVALW156 - 163
d_612ens_2TYRTHRW165 - 173
d_71ens_2ASPSERX6 - 9
d_72ens_2LEULEUX11 - 12
d_73ens_2ARGGLYX15 - 21
d_74ens_2VALPROX23 - 43
d_75ens_2LYSALAX45 - 84
d_76ens_2METALAX86 - 95
d_77ens_2GLYALAX97 - 127
d_78ens_2GLULEUX129 - 149
d_79ens_2GLNGLUX151 - 153
d_710ens_2ASPASPX155 - 159
d_711ens_2PHEVALX161 - 168
d_712ens_2TYRTHRX170 - 178
d_81ens_2ASPSERZ5 - 8
d_82ens_2LEULEUZ10 - 11
d_83ens_2ARGGLYZ14 - 20
d_84ens_2VALPROZ22 - 42
d_85ens_2LYSALAZ44 - 83
d_86ens_2METALAZ85 - 94
d_87ens_2GLYALAZ96 - 126
d_88ens_2GLULEUZ128 - 148
d_89ens_2GLNGLUZ150 - 152
d_810ens_2ASPASPZ154 - 158
d_811ens_2PHEVALZ160 - 167
d_812ens_2TYRTHRZ169 - 177

NCSアンサンブル:
ID
ens_1
ens_2

-
要素

#1: タンパク質 ...
ATP-dependent Clp protease proteolytic subunit / Caseinolytic protease / Endopeptidase Clp / Heat shock protein F21.5 / Protease Ti


分子量: 21586.863 Da / 分子数: 28 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli K-12 (大腸菌) / : K12 / 遺伝子: clpP, lopP, b0437, JW0427 / 発現宿主: Escherichia coli BL21(DE3) (大腸菌) / 参照: UniProt: P0A6G7, endopeptidase Clp
#2: 化合物...
ChemComp-MPD / (4S)-2-METHYL-2,4-PENTANEDIOL / (S)-2-メチル-2,4-ペンタンジオ-ル


分子量: 118.174 Da / 分子数: 50 / 由来タイプ: 合成 / : C6H14O2 / コメント: 沈殿剤*YM
#3: 化合物
ChemComp-ACT / ACETATE ION / 酢酸イオン


分子量: 59.044 Da / 分子数: 10 / 由来タイプ: 合成 / : C2H3O2
#4: 化合物...
ChemComp-ZGV / 4-[(1E)-3-{[(2E,4E,6E,8S)-8-hydroxy-4-methyldeca-2,4,6-trienoyl]amino}-3-oxoprop-1-en-1-yl]azete-1(2H)-carboxylic acid


分子量: 346.378 Da / 分子数: 28 / 由来タイプ: 合成 / : C18H22N2O5 / タイプ: SUBJECT OF INVESTIGATION
#5: 水 ChemComp-HOH / water


分子量: 18.015 Da / 分子数: 103 / 由来タイプ: 天然 / : H2O
研究の焦点であるリガンドがあるかY
Has protein modificationY

-
実験情報

-
実験

実験手法: X線回折 / 使用した結晶の数: 1

-
試料調製

結晶マシュー密度: 2.34 Å3/Da / 溶媒含有率: 47.45 %
結晶化温度: 293 K / 手法: 蒸気拡散法, ハンギングドロップ法 / pH: 5.6 / 詳細: 0.1 M sodium acetate, 30% MPD

-
データ収集

回折平均測定温度: 100 K / Serial crystal experiment: N
放射光源由来: シンクロトロン / サイト: CLSI / ビームライン: 08B1-1 / 波長: 0.97895 Å
検出器タイプ: RAYONIX MX-300 / 検出器: CCD / 日付: 2021年2月5日
放射プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長波長: 0.97895 Å / 相対比: 1
反射解像度: 2.95→45.41 Å / Num. obs: 125212 / % possible obs: 99.71 % / 冗長度: 3.9 % / Biso Wilson estimate: 60.71 Å2 / CC1/2: 0.988 / Rmerge(I) obs: 0.175 / Rpim(I) all: 0.102 / Net I/σ(I): 6.9
反射 シェル解像度: 2.95→3.055 Å / Rmerge(I) obs: 1.25 / Mean I/σ(I) obs: 1.2 / Num. unique obs: 12429 / CC1/2: 0.423 / Rpim(I) all: 0.72 / % possible all: 99.7

-
解析

ソフトウェア
名称バージョン分類
PHENIX1.19.1_4122精密化
PDB_EXTRACT3.27データ抽出
XDSデータ削減
XDSデータスケーリング
PHENIX位相決定
精密化構造決定の手法: 分子置換
開始モデル: ITYF

解像度: 2.95→45.41 Å / SU ML: 0.4229 / 交差検証法: FREE R-VALUE / σ(F): 1.35 / 位相誤差: 26.0871
立体化学のターゲット値: GeoStd + Monomer Library + CDL v1.2
Rfactor反射数%反射
Rfree0.2479 6042 4.83 %
Rwork0.2106 119116 -
obs0.2124 125158 99.74 %
溶媒の処理減衰半径: 0.9 Å / VDWプローブ半径: 1.11 Å / 溶媒モデル: FLAT BULK SOLVENT MODEL
原子変位パラメータBiso mean: 56.79 Å2
精密化ステップサイクル: LAST / 解像度: 2.95→45.41 Å
タンパク質核酸リガンド溶媒全体
原子数39239 0 857 103 40199
拘束条件
Refine-IDタイプDev ideal
X-RAY DIFFRACTIONf_bond_d0.0140664
X-RAY DIFFRACTIONf_angle_d1.267154794
X-RAY DIFFRACTIONf_chiral_restr0.04896174
X-RAY DIFFRACTIONf_plane_restr0.02487014
X-RAY DIFFRACTIONf_dihedral_angle_d14.94615507
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-IDRefine-IDタイプRms dev position (Å)
ens_1d_2AX-RAY DIFFRACTIONTorsion NCS0.633409487144
ens_1d_3AX-RAY DIFFRACTIONTorsion NCS0.577092359886
ens_1d_4AX-RAY DIFFRACTIONTorsion NCS0.557991302773
ens_1d_5AX-RAY DIFFRACTIONTorsion NCS0.599819598206
ens_1d_6AX-RAY DIFFRACTIONTorsion NCS0.560760980354
ens_1d_7AX-RAY DIFFRACTIONTorsion NCS0.58105511465
ens_1d_8AX-RAY DIFFRACTIONTorsion NCS0.49225064457
ens_1d_9AX-RAY DIFFRACTIONTorsion NCS0.532646022897
ens_1d_10AX-RAY DIFFRACTIONTorsion NCS0.600083004638
ens_1d_11AX-RAY DIFFRACTIONTorsion NCS0.526508912821
ens_1d_12AX-RAY DIFFRACTIONTorsion NCS0.532951855245
ens_1d_13AX-RAY DIFFRACTIONTorsion NCS0.548013740682
ens_1d_14AX-RAY DIFFRACTIONTorsion NCS0.579318975473
ens_1d_15AX-RAY DIFFRACTIONTorsion NCS0.565027762168
ens_1d_16AX-RAY DIFFRACTIONTorsion NCS0.571576218042
ens_1d_17AX-RAY DIFFRACTIONTorsion NCS0.570299702054
ens_1d_18AX-RAY DIFFRACTIONTorsion NCS0.512285044772
ens_1d_19AX-RAY DIFFRACTIONTorsion NCS0.557201611791
ens_1d_20AX-RAY DIFFRACTIONTorsion NCS0.551001513396
ens_2d_2GX-RAY DIFFRACTIONTorsion NCS0.569234518695
ens_2d_3GX-RAY DIFFRACTIONTorsion NCS0.509944264632
ens_2d_4GX-RAY DIFFRACTIONTorsion NCS0.602005374677
ens_2d_5GX-RAY DIFFRACTIONTorsion NCS0.557496862516
ens_2d_6GX-RAY DIFFRACTIONTorsion NCS0.577641928503
ens_2d_7GX-RAY DIFFRACTIONTorsion NCS0.551632510436
ens_2d_8GX-RAY DIFFRACTIONTorsion NCS0.571584883303
LS精密化 シェル
解像度 (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
2.95-2.980.35952040.32433913X-RAY DIFFRACTION99.78
2.98-3.020.32531930.31983984X-RAY DIFFRACTION99.57
3.02-3.060.3581990.30243930X-RAY DIFFRACTION99.76
3.06-3.090.32182070.29353936X-RAY DIFFRACTION99.74
3.09-3.130.33482100.29823991X-RAY DIFFRACTION99.74
3.13-3.180.32822160.29783913X-RAY DIFFRACTION99.78
3.18-3.220.3132140.2893968X-RAY DIFFRACTION99.79
3.22-3.270.37752240.29174020X-RAY DIFFRACTION99.79
3.27-3.320.31241800.28513935X-RAY DIFFRACTION99.69
3.32-3.380.30281970.26743968X-RAY DIFFRACTION99.83
3.38-3.430.32532120.25353926X-RAY DIFFRACTION99.93
3.43-3.50.31821770.24714016X-RAY DIFFRACTION99.83
3.5-3.560.29491980.23633933X-RAY DIFFRACTION99.9
3.56-3.640.2741930.22394006X-RAY DIFFRACTION99.74
3.64-3.720.29481870.23783958X-RAY DIFFRACTION99.88
3.72-3.80.28482110.23113965X-RAY DIFFRACTION99.93
3.8-3.90.25752110.20743963X-RAY DIFFRACTION99.93
3.9-40.21042040.19333962X-RAY DIFFRACTION99.83
4-4.120.23852190.18793983X-RAY DIFFRACTION99.76
4.12-4.250.21992240.17663960X-RAY DIFFRACTION99.95
4.25-4.410.18421870.16493953X-RAY DIFFRACTION99.83
4.41-4.580.17712090.1563955X-RAY DIFFRACTION99.88
4.58-4.790.18662120.15843976X-RAY DIFFRACTION99.86
4.79-5.040.22082040.1783973X-RAY DIFFRACTION99.76
5.04-5.360.23252050.18983975X-RAY DIFFRACTION99.74
5.36-5.770.22011530.20214034X-RAY DIFFRACTION99.76
5.77-6.350.25541920.20774006X-RAY DIFFRACTION99.6
6.35-7.270.2411810.1934025X-RAY DIFFRACTION99.67
7.27-9.140.20372020.1773993X-RAY DIFFRACTION99.76
9.14-45.410.18932170.17243996X-RAY DIFFRACTION98.39
精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
16.219022920740.9060788920120.5673317628862.199208915591.762969445461.992286153180.3132539189280.641094940990.00271123926325-0.4568426797010.03159483861630.0488815249781-0.02152371026990.1789169057170.326220729630.7534842547120.08301375580720.002708998511330.594289288469-0.09242698998930.54132843471911.9664.4878.503
23.63471987395-0.2572637001790.6018654470277.00736844628-6.003466468975.215813508540.5565398913920.0619506599650.109954366687-0.0472166861778-0.7227932281620.885253831117-0.185087896956-0.342792449962-0.2051946092620.5679921825250.04586269290380.09323251991170.427278703696-0.1353844240850.434771261038.96156.39287.638
34.295825661232.12118495142.758718854076.55749608692-0.9354720175992.94300768377-0.07623332500050.01841050869120.0804840747892-0.262371302321-0.3194568646590.05282744360570.124511148694-0.1800349169440.3578834755970.507445311396-0.08935140646750.09552327645820.584648027962-0.1788363206860.34543478984215.69757.26192.746
46.062516019230.6652110445181.883332173231.1270340596-2.126311503465.736562718510.034164748739-0.7984835722090.3909211283820.3450913778030.0131500546429-0.141616517867-0.236443100884-0.5701969608370.004344387283920.448849400894-0.01675067273570.01532664954360.463353941023-0.1681279709980.3764376223468.29254.20595.995
56.680201527810.5815757916152.668960770742.28870424777-1.022187094691.582837485930.0112709015751-0.6727373062970.602793633320.11130860806-0.2138166181990.6760789957320.195297631078-0.4851757424030.1945565310130.520301361590.04037246588210.05840988850680.643707116293-0.2326671860790.443854802570.69853.67695.266
62.81277643754-2.4461075731.937981833264.49077561197-0.5978183699531.011872633510.979692719492-0.170958471168-0.0210270449721-1.43160798193-0.7201232144280.289540932230.6261164635670.00691300889547-0.1834906493990.547254912812-0.07975884197850.09585589115750.5377282395280.002200096268370.3335160086843.71135.95992.074
76.53018817109-7.52332569296-3.32823389698.567929075663.7486217322.54257623208-0.034228688521-1.16938505833-0.126839356105-0.3416488877750.221372497509-0.146400357956-0.1414862346840.111936007649-0.3130771859660.426166159278-0.1066030482290.08652874212220.585802747944-0.0002427196493360.4450880521858.54834.641103.91
89.69564286718-1.066442298362.712060738197.480742978730.4386239098299.55716508251-0.990630470043-0.777120904542-1.249034735890.152950915174-0.05872910402710.8361751966620.0849937607784-2.52682214161.072238647820.591205534682-0.08853293097090.166885095080.911847549012-0.09410160113570.622251333903-6.06838.046104.53
97.44604296213-8.612761937133.858877366949.93568781798-4.627145523992.09959255012-0.62029136957-1.897354494820.4208802783170.8487876662771.269551366670.37652131341-0.204245209105-0.523476339678-0.7726294541490.480103489808-0.08124117871920.1785002256490.763339073888-0.1271473157540.589902065726-9.01941.67594.443
102.551564494011.59643834842.520100756462.52501778013-0.4559121265998.350248074560.296839178318-0.9697343819180.965193821922-0.5330010674950.1531472433640.350674790917-1.07103059664-0.986806338189-0.1910134453660.6664587967780.0343258054430.1803520522510.718547736739-0.4260961679440.916272605646-8.8859.00391.668
115.00461857628-0.03892593975770.9261282844743.178739733562.995375239335.162409240970.1616452765060.3281653639370.255170001077-0.0840228369372-0.104652430809-0.175397692723-0.345394477745-0.289693655737-0.1042496933890.458510144853-0.0594728870070.1094632759950.433514993207-0.004365991290910.3288626888128.97955.49593.263
120.710605422194-1.22986641065-0.6721575640791.360128603430.2593063210411.959313810490.0256661182924-0.1914846589010.06312429870490.162932991760.0952872761082-0.0786995574331-0.1380395825730.348255349962-0.1470304471210.413344564939-0.1056526250550.07306353650370.517908870905-0.06159925899360.35422409915930.62943.362100.889
132.21837023558-2.41074808898-1.713594283843.915239414841.858897109263.165852685570.0192955194556-0.7375812177180.128023855530.3848131295560.133548099222-0.0745876273998-0.001071380445430.43311458365-0.1336963457360.63727393587-0.123674808461-0.03212121257850.616219031603-0.0145539612750.34358352446431.40235.067106.317
143.75508294328-1.61828178674-0.695750891747.302145687060.7132926527865.397425611020.1633947596810.005552985027340.0318722469744-0.04256056946020.1645614084660.278205193463-0.523571955734-0.148811611872-0.2080434011610.3309186651680.00376481538281-0.01221552611880.378009174703-0.01448329230530.30191659588243.97755.03281.259
152.39460392607-0.108595371615-0.3902784239192.527406599832.52713677272.738642362860.0402958490505-0.06512494147340.1959595860140.0381416414578-0.1785158676950.1594196959980.1222882547280.1735468602960.06827008027950.315934484002-0.0318720280292-0.01777398847170.3013009815640.005974104944940.39572620747251.74742.90183.059
161.096681439560.4749438409781.007022487843.501334876382.861286959376.773712149210.0935462869679-0.229731517289-0.1735391011910.4162949364190.0824529207057-0.3038714422550.2649103350570.51464862566-0.2958907370560.381043191562-0.0199268474788-0.09223056173380.4743392972730.03653132567980.51557100992457.37434.28484.237
171.45113925089-1.9308232269-1.506396075382.682283642932.308452646017.690550151570.19934207438-1.477444352471.18209961632-0.59010641004-0.08528790556741.14330591208-0.262181963906-0.365863419244-0.335362701810.584418817687-0.028127562901-0.1516030562660.840134897695-0.273108398820.74081280640140.63962.571.884
185.73918420602-0.3691125158521.309166120672.795518400110.6623469953435.74076778449-0.3372310043070.1057064597740.4543184419990.000612162040832-0.1583711133150.280913729083-0.420418157868-0.1516471445430.2654011666030.354318123528-0.1061435961280.01760189343580.3039632613370.05576930996070.45946733549143.14356.4358.751
195.08021372856-1.050063205081.440219536572.235129149860.793565014924.53961316103-0.1719926106430.0168311261110.609022954587-0.0749492233060.4019825015720.807077558592-0.2359811933720.206475000240.1470958385360.388114599214-0.03795028120080.005741077704430.404840661469-0.03864100425980.42583345708150.61356.08160.239
203.93009844937-1.126648675442.884864219433.3018170317-0.9156606776954.97576210065-0.07584367894160.583656248810.35199498161-0.120915992184-0.0317753088611-0.439318814727-0.379812017890.7017209777690.1389242757270.418029839632-0.1205214957290.09637776271970.379342374890.03382396699420.43625344505252.76951.26655.917
212.379126514821.399145203735.052717977650.9358105541962.648718301869.546953806160.539717116865-0.4681621426-0.1839189265240.243946185471-0.409766434193-0.1571080933220.756339938502-0.587122946479-0.2248699659980.485073879269-0.01728158781030.1078189279640.3460118670340.0170659924150.50356253509547.99434.99354.961
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1687.585800352113.290523715785.264709771981.784409399933.378146712964.08039164308-0.09271395258260.566332787052-0.149074378957-0.1985919168650.167062912314-0.106666700754-0.05945424124590.954417939508-0.02268514300550.383588563357-0.08761003358180.05655729126940.51816322845-0.001212511849220.49674753906997.534.275142.716
1694.060149585975.007893583692.026410824836.749863283114.447883246176.77729381287-0.226756925256-0.4813656099380.222232115372-0.471802718692-0.03249600183780.144691052063-0.5656915418110.324254826360.2677986744770.3688387943030.00847645727694-0.1112664909090.5063846200010.0426087354780.487408909641100.14740.571161.75
1705.643124568022.46930576147-5.105153931243.939218532430.9302395382348.32047434315-0.1961270681490.121686803380.537350250398-0.18286968837-0.2032433471230.873546488391-1.64787620265-0.03321513641550.2670962532060.7596245212920.0482731811629-0.1687259658240.4515247326520.1314557555420.51672624863668.75362.315172.131
1716.62785854346-1.50604478464-0.6683917572014.49816251195-1.861114033795.01663443169-0.1794486816310.09453004267620.281763622673-0.187048871836-0.0106164829889-0.180579305287-0.3032286661330.1661172130720.08639249301810.3761603929870.00108520682469-0.04359150145640.338019489894-0.02105112294280.25450774490182.07852.633172.844
1721.54842543355-2.40512333578-2.077038550363.070256114412.325749267222.3862822051-0.1492843879280.210367484441-0.1060499642330.0421167588997-0.09430252008030.125191086437-0.04905288508520.1642614333570.2902478096040.4118673639760.0192888558896-0.07179211457110.3675772905450.0002917688996230.33154412512281.62643.03179.744
1730.2915967981471.136590149611.630914712424.466519670734.253656390926.32580242737-0.153568090621-0.1400912509470.324527869213-0.04879752933480.342667862905-0.204166854629-0.174957266420.625465425664-0.2079510109680.3434025573890.0339289715469-0.08582033428080.531287981441-0.02962747745540.40404419300492.16332.027176.733
1741.891257570871.68019410011-1.331697455946.211642605953.643614416526.40551596673-0.518619587084-0.02177744837680.1992836658280.854346725850.6481193214420.283134373996-0.2010334743710.268799473075-0.1081972885720.4710124997760.0570112689717-0.07224773077920.4523108176940.04104933883830.38944180784379.33541.85190.245
1756.11175826257-5.180116479775.310815222216.87701336653-6.465233773549.31269411146-0.22670090302-0.2169816368511.27635374141-1.36654019684-0.6501818436330.385174605733-0.6012728639120.1217846762260.951438653670.6647874587310.211735337303-0.1138458858950.876087507518-0.2192413942790.61731644516754.51763.64169.938
1768.995987504380.797591407801-0.7528017131032.103827886783.49333689068.575736527470.403396677905-0.1011825785990.208191066135-0.852865866842-0.2475175598040.37123496917-0.06937924960720.0193561957052-0.0145247021290.4663100192090.1406629573360.008309778588030.4163201611620.02526698828810.45513750977956.84155.497178.195
1775.980040856491.93573790911-0.2225099064358.53323994483-1.104873827953.47030189235-0.06151439778060.2843042478280.151419819734-0.8470778401880.546958693522-1.102953323890.1291315789960.282065712581-0.1329917986380.5141179765220.101474449401-0.04842907301490.479747198666-0.04127551355320.35460239506765.4156.871179.227
1783.8336182109-0.0156154723352-1.606434644575.59670298196-1.021796547042.441138474610.134820596361-0.3641113585420.4357561623310.6010202635660.13874353857-0.493756494340.0628275755863-0.195532303523-0.2428726194170.5776252122890.0786733128064-0.06601094653120.466765472185-0.07301362228630.33938821158360.20954.391186.441
1793.2230085143-1.716869800120.3905557588632.434400815540.5900495930853.31917420457-0.332043338013-0.0248155941630.391289858324-0.50056790480.207576295438-0.571227930439-1.095187892340.608791721045-0.07958564720310.6262586158990.05006037855080.01534793951830.500944051972-0.1174698063320.51442847633953.21446.044185.6
1802.24018861122-2.048899517440.2727734688712.86571841835-0.6544697432841.11315788351-0.274034846816-0.284657489112-0.09497607164180.2594499655750.3190017506840.183442842941-0.1001144187430.23176260647-0.1500213279640.498496196350.0523570474592-0.01897418145190.434543668271-0.05631266283180.26759771646454.38141.888186.98
1817.99010995837-5.9719821307-7.307632470384.883823364456.475836387788.32531380906-0.206816360324-0.929016566562-0.114991721205-0.1427277429740.341077974420.0379401079803-0.1086024799350.511975930803-0.09796089891410.4477020764520.02778985797640.03433692719280.544444529812-0.003834027593560.30491929546766.16533.852191.565
1828.30308519119-0.701906903698-0.4937337952287.28656478736.916964141218.69272278038-0.224671806225-0.317685490804-1.065887230951.10519824212-0.0858011776670.1351134558271.41673128607-0.8121944316590.4429609307920.7149798533670.09047214450220.08927279192230.878412482529-0.01208820101360.39466697326153.82735.973199.621
1835.78181112652-6.74514388337-0.9071720411898.057291785361.237653640960.406608586676-0.649208374938-1.02690097114-0.5714441835931.189689175320.5779599623781.012679179920.002860442005490.3242532441990.01509828068630.4900708508080.04006773548380.2137368103250.743138597958-0.1228060925340.57385293301545.9139.788192.705
1844.25664069571-4.611119560256.227836349884.8484234538-6.58432669648.77670182545-0.7039416688520.235622900746-0.2478356454020.9317064153740.6235586881370.550425720458-1.60636075594-0.8843890607610.3830915336720.6088392301110.2149816543290.03939803871610.768628629151-0.123867301120.63286173726243.83355.998191.631
1854.24058504573-0.6362087936071.476598635457.89713644438-6.338473147299.38982959082-0.1488195505660.2532329204750.394348463773-0.10209727416-0.212869077038-0.492845962714-0.3271898900590.2792075089590.3791620093380.3421261670150.09853230335880.03543175545960.41359576264-0.0001456784913940.56896155999544.46961.576162.647
1866.912113354081.05168094291.547652283441.778758588250.5130748513486.28401202424-0.0925866697286-0.03814827481540.4932377927840.275129295009-0.47318766803-0.242256639918-0.818228823399-0.1761804525860.5925761112970.5610997538390.138507611547-0.05279800804220.4636656344220.04965460809510.36675388331646.48359.791173.145
1874.646983032141.555898474022.091541395421.60513786134-1.0469601023.78013445203-0.363233669446-0.4792739022780.6292511706480.341931673530.1527283342760.304856894924-0.468363483022-0.3001171970590.2357503577290.4891863767110.144976344876-0.0143120234690.367049285848-0.08552056501330.42674171149336.37956.5172.563
1880.2023492282390.271478750490.1021432630190.975442420238-1.386616016784.26011415107-0.0232189464995-0.5077895555120.268082055571-0.08670497488870.1852013369010.0938901828951-0.215401425613-0.396594881086-0.2081072183550.3525093445380.1143059597660.1027240505730.600553884306-0.04333786430050.48812676872331.91846.313170.589
1895.64092478199-7.131114183922.251389003317.99789669615-1.530694118211.68528613172-0.0179447335649-1.061473637790.723326350775-0.3581080196880.226248044034-0.885874619673-0.263881814534-0.555232387778-0.2176337945960.4134293707930.04878640332660.1971720322160.723653096375-0.0002816980313980.52197627015934.92338.7183.157
1901.32955912909-1.301115069972.569968993397.37418233423-4.743460031855.36532756530.165329360373-0.357184876726-0.06260362147391.146542315260.3086320101171.15240989018-0.366660665579-0.354314581998-0.4988696255150.4710840689510.1069791237870.115417195930.656366630748-0.03058310006690.51614221641521.59743.84172.35
1918.963773451710.52549507359-4.403376689367.093063695314.16880901884.941922265920.6219314103770.6817500645651.51673477595-0.06292581605780.08902730680240.7665888684840.624168688619-0.218482860197-0.2672832164450.5330132646960.2637256653180.3051095848490.7060923551070.1194686449710.84390634616823.0959.574164.908
1922.2018341198-2.685299460331.358472837638.361358181612.403397905165.418561206460.5296026313991.031812068531.73179556209-1.68050657236-0.91068589153-0.605099788447-0.5109199172580.4753033562850.3017700048250.66784613995-0.07801862635760.1505646251270.4905956133660.127729122290.65040826443352.7166.602146.161
1935.01414716967-0.05661435159390.05928390805292.03008003369-1.400809864488.92022054279-0.225813800414-0.1739135670240.2502878854950.4267639700620.181968322429-0.445773474167-0.7598871676430.1969748670750.1127456012140.3921781572330.0598714999724-0.01030442550840.2812851698160.004848412330640.59250256455240.71161.448151.127
1943.58244961818-0.1142385608071.009685857012.07951042034-1.926346237346.16198397572-0.233704846793-0.1302215257050.06929765357990.2869000649340.2599576406070.338571850465-0.579729700181-0.538808473976-0.1058607909850.4048472711050.06729167538180.05826299673950.389465303535-0.0010567422910.55495139212433.72160.085148.717
1955.190774076310.450222015541-1.272896039334.347713880430.3065687507752.81193179734-0.307870881897-0.3454804063870.743021356698-0.01331826641410.377371489828-0.222541552135-0.32556479449-0.209621429923-0.123835850490.4713628991260.1075799662140.003539208625890.258065551387-0.01767835620980.46884486851332.8557.974143.206
1960.6499759249482.3647938495-1.761822823026.95109884978-5.171725239035.43235790816-0.300353094719-0.183952174753-0.157705762993-0.26791284217-0.192431165148-0.560376585479-0.0249242951842-0.129485169460.5771346729790.286084292020.048697890793-0.04358339099880.4344641222780.08320118936120.50306803785330.92448.954142.395
1970.753050477802-2.27695888462.218803015129.2432350226-8.097189024477.97490734649-0.359437561677-0.2028340854620.0003765962624870.3084140154070.380608259449-0.0607723039629-0.417005530779-0.762334049451-0.2145092655710.2784882109890.03724869931420.00184197508160.4983222989180.02079458875370.48731656482522.29743.123153.178
1982.782103791721.81080636944-0.1116891752333.61374985374-4.442873636668.07152606435-0.466599340885-0.748641907903-0.158340123579-1.25969288980.2293349698170.531390570108-0.150958066891-1.092615314320.4410534387980.6521097783880.091060514461-0.125450517690.405602313640.03607908565730.53455222618516.62946.465139.414
1992.557145227472.5114393174-1.343550219694.04123940768-0.09562435694772.87076250386-0.352642085378-0.2798463105140.406264201217-0.5984501668141.264478631022.011099962440.231919885127-0.313490367821-0.8144470853530.4703190575190.08254452753590.00102475774060.4966406539630.05522261820090.5387245644426.46147.304133.538
2005.622739954724.00536516756-3.831956592173.35678772683-2.031787625064.137743752190.4304991283290.9646660400072.723592731350.8529272735920.9798382136350.574351119518-1.41662184688-0.703948680009-1.309266461990.9081199066530.0198703046670.082982236560.489817903050.1808671123760.73962222541632.2963.112130.685
精密化 TLSグループ
IDRefine-IDRefine TLS-IDSelection detailsAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1( CHAIN A AND RESID 2:24 )A2 - 24
2X-RAY DIFFRACTION2( CHAIN A AND RESID 25:36 )A25 - 36
3X-RAY DIFFRACTION3( CHAIN A AND RESID 37:53 )A37 - 53
4X-RAY DIFFRACTION4( CHAIN A AND RESID 54:82 )A54 - 82
5X-RAY DIFFRACTION5( CHAIN A AND RESID 83:114 )A83 - 114
6X-RAY DIFFRACTION6( CHAIN A AND RESID 115:131 )A115 - 131
7X-RAY DIFFRACTION7( CHAIN A AND RESID 132:157 )A132 - 157
8X-RAY DIFFRACTION8( CHAIN A AND RESID 158:168 )A158 - 168
9X-RAY DIFFRACTION9( CHAIN A AND RESID 169:182 )A169 - 182
10X-RAY DIFFRACTION10( CHAIN A AND RESID 183:193 )A183 - 193
11X-RAY DIFFRACTION11( CHAIN B AND RESID 3:69 )B3 - 69
12X-RAY DIFFRACTION12( CHAIN B AND RESID 70:131 )B70 - 131
13X-RAY DIFFRACTION13( CHAIN B AND RESID 132:192 )B132 - 192
14X-RAY DIFFRACTION14( CHAIN C AND RESID 3:69 )C3 - 69
15X-RAY DIFFRACTION15( CHAIN C AND RESID 70:131 )C70 - 131
16X-RAY DIFFRACTION16( CHAIN C AND RESID 132:191 )C132 - 191
17X-RAY DIFFRACTION17( CHAIN D AND RESID 3:25 )D3 - 25
18X-RAY DIFFRACTION18( CHAIN D AND RESID 26:53 )D26 - 53
19X-RAY DIFFRACTION19( CHAIN D AND RESID 54:69 )D54 - 69
20X-RAY DIFFRACTION20( CHAIN D AND RESID 70:114 )D70 - 114
21X-RAY DIFFRACTION21( CHAIN D AND RESID 115:131 )D115 - 131
22X-RAY DIFFRACTION22( CHAIN D AND RESID 132:157 )D132 - 157
23X-RAY DIFFRACTION23( CHAIN D AND RESID 158:182 )D158 - 182
24X-RAY DIFFRACTION24( CHAIN D AND RESID 183:192 )D183 - 192
25X-RAY DIFFRACTION25( CHAIN E AND RESID 2:25 )E2 - 25
26X-RAY DIFFRACTION26( CHAIN E AND RESID 26:131 )E26 - 131
27X-RAY DIFFRACTION27( CHAIN E AND RESID 132:168 )E132 - 168
28X-RAY DIFFRACTION28( CHAIN E AND RESID 169:193 )E169 - 193
29X-RAY DIFFRACTION29( CHAIN F AND RESID 3:25 )F3 - 25
30X-RAY DIFFRACTION30( CHAIN F AND RESID 26:91 )F26 - 91
31X-RAY DIFFRACTION31( CHAIN F AND RESID 92:104 )F92 - 104
32X-RAY DIFFRACTION32( CHAIN F AND RESID 105:131 )F105 - 131
33X-RAY DIFFRACTION33( CHAIN F AND RESID 132:157 )F132 - 157
34X-RAY DIFFRACTION34( CHAIN F AND RESID 158:168 )F158 - 168
35X-RAY DIFFRACTION35( CHAIN F AND RESID 169:182 )F169 - 182
36X-RAY DIFFRACTION36( CHAIN F AND RESID 183:193 )F183 - 193
37X-RAY DIFFRACTION37( CHAIN G AND RESID 3:24 )G3 - 24
38X-RAY DIFFRACTION38( CHAIN G AND RESID 25:91 )G25 - 91
39X-RAY DIFFRACTION39( CHAIN G AND RESID 92:114 )G92 - 114
40X-RAY DIFFRACTION40( CHAIN G AND RESID 115:131 )G115 - 131
41X-RAY DIFFRACTION41( CHAIN G AND RESID 132:157 )G132 - 157
42X-RAY DIFFRACTION42( CHAIN G AND RESID 158:168 )G158 - 168
43X-RAY DIFFRACTION43( CHAIN G AND RESID 169:182 )G169 - 182
44X-RAY DIFFRACTION44( CHAIN G AND RESID 183:192 )G183 - 192
45X-RAY DIFFRACTION45( CHAIN H AND RESID 17:26 )H17 - 26
46X-RAY DIFFRACTION46( CHAIN H AND RESID 27:69 )H27 - 69
47X-RAY DIFFRACTION47( CHAIN H AND RESID 70:91 )H70 - 91
48X-RAY DIFFRACTION48( CHAIN H AND RESID 92:104 )H92 - 104
49X-RAY DIFFRACTION49( CHAIN H AND RESID 105:131 )H105 - 131
50X-RAY DIFFRACTION50( CHAIN H AND RESID 132:168 )H132 - 168
51X-RAY DIFFRACTION51( CHAIN H AND RESID 169:182 )H169 - 182
52X-RAY DIFFRACTION52( CHAIN H AND RESID 183:193 )H183 - 193
53X-RAY DIFFRACTION53( CHAIN I AND RESID 2:26 )I2 - 26
54X-RAY DIFFRACTION54( CHAIN I AND RESID 27:114 )I27 - 114
55X-RAY DIFFRACTION55( CHAIN I AND RESID 115:131 )I115 - 131
56X-RAY DIFFRACTION56( CHAIN I AND RESID 132:168 )I132 - 168
57X-RAY DIFFRACTION57( CHAIN I AND RESID 169:182 )I169 - 182
58X-RAY DIFFRACTION58( CHAIN I AND RESID 183:193 )I183 - 193
59X-RAY DIFFRACTION59( CHAIN J AND RESID 3:24 )J3 - 24
60X-RAY DIFFRACTION60( CHAIN J AND RESID 25:53 )J25 - 53
61X-RAY DIFFRACTION61( CHAIN J AND RESID 54:104 )J54 - 104
62X-RAY DIFFRACTION62( CHAIN J AND RESID 105:131 )J105 - 131
63X-RAY DIFFRACTION63( CHAIN J AND RESID 132:157 )J132 - 157
64X-RAY DIFFRACTION64( CHAIN J AND RESID 158:168 )J158 - 168
65X-RAY DIFFRACTION65( CHAIN J AND RESID 169:182 )J169 - 182
66X-RAY DIFFRACTION66( CHAIN J AND RESID 183:193 )J183 - 193
67X-RAY DIFFRACTION67( CHAIN K AND RESID 3:25 )K3 - 25
68X-RAY DIFFRACTION68( CHAIN K AND RESID 26:104 )K26 - 104
69X-RAY DIFFRACTION69( CHAIN K AND RESID 105:131 )K105 - 131
70X-RAY DIFFRACTION70( CHAIN K AND RESID 132:157 )K132 - 157
71X-RAY DIFFRACTION71( CHAIN K AND RESID 158:182 )K158 - 182
72X-RAY DIFFRACTION72( CHAIN K AND RESID 183:192 )K183 - 192
73X-RAY DIFFRACTION73( CHAIN L AND RESID 3:25 )L3 - 25
74X-RAY DIFFRACTION74( CHAIN L AND RESID 26:36 )L26 - 36
75X-RAY DIFFRACTION75( CHAIN L AND RESID 37:104 )L37 - 104
76X-RAY DIFFRACTION76( CHAIN L AND RESID 105:131 )L105 - 131
77X-RAY DIFFRACTION77( CHAIN L AND RESID 132:157 )L132 - 157
78X-RAY DIFFRACTION78( CHAIN L AND RESID 158:168 )L158 - 168
79X-RAY DIFFRACTION79( CHAIN L AND RESID 169:182 )L169 - 182
80X-RAY DIFFRACTION80( CHAIN L AND RESID 183:192 )L183 - 192
81X-RAY DIFFRACTION81( CHAIN M AND RESID 3:24 )M3 - 24
82X-RAY DIFFRACTION82( CHAIN M AND RESID 25:91 )M25 - 91
83X-RAY DIFFRACTION83( CHAIN M AND RESID 92:104 )M92 - 104
84X-RAY DIFFRACTION84( CHAIN M AND RESID 105:131 )M105 - 131
85X-RAY DIFFRACTION85( CHAIN M AND RESID 132:168 )M132 - 168
86X-RAY DIFFRACTION86( CHAIN M AND RESID 169:192 )M169 - 192
87X-RAY DIFFRACTION87( CHAIN N AND RESID 3:26 )N3 - 26
88X-RAY DIFFRACTION88( CHAIN N AND RESID 27:53 )N27 - 53
89X-RAY DIFFRACTION89( CHAIN N AND RESID 54:69 )N54 - 69
90X-RAY DIFFRACTION90( CHAIN N AND RESID 70:91 )N70 - 91
91X-RAY DIFFRACTION91( CHAIN N AND RESID 92:114 )N92 - 114
92X-RAY DIFFRACTION92( CHAIN N AND RESID 115:131 )N115 - 131
93X-RAY DIFFRACTION93( CHAIN N AND RESID 132:157 )N132 - 157
94X-RAY DIFFRACTION94( CHAIN N AND RESID 158:168 )N158 - 168
95X-RAY DIFFRACTION95( CHAIN N AND RESID 169:182 )N169 - 182
96X-RAY DIFFRACTION96( CHAIN N AND RESID 183:192 )N183 - 192
97X-RAY DIFFRACTION97( CHAIN O AND RESID 2:36 )O2 - 36
98X-RAY DIFFRACTION98( CHAIN O AND RESID 37:91 )O37 - 91
99X-RAY DIFFRACTION99( CHAIN O AND RESID 92:104 )O92 - 104
100X-RAY DIFFRACTION100( CHAIN O AND RESID 105:131 )O105 - 131
101X-RAY DIFFRACTION101( CHAIN O AND RESID 132:168 )O132 - 168
102X-RAY DIFFRACTION102( CHAIN O AND RESID 169:182 )O169 - 182
103X-RAY DIFFRACTION103( CHAIN O AND RESID 183:191 )O183 - 191
104X-RAY DIFFRACTION104( CHAIN P AND RESID 3:25 )P3 - 25
105X-RAY DIFFRACTION105( CHAIN P AND RESID 26:36 )P26 - 36
106X-RAY DIFFRACTION106( CHAIN P AND RESID 37:82 )P37 - 82
107X-RAY DIFFRACTION107( CHAIN P AND RESID 83:104 )P83 - 104
108X-RAY DIFFRACTION108( CHAIN P AND RESID 105:131 )P105 - 131
109X-RAY DIFFRACTION109( CHAIN P AND RESID 132:157 )P132 - 157
110X-RAY DIFFRACTION110( CHAIN P AND RESID 158:168 )P158 - 168
111X-RAY DIFFRACTION111( CHAIN P AND RESID 169:182 )P169 - 182
112X-RAY DIFFRACTION112( CHAIN P AND RESID 183:192 )P183 - 192
113X-RAY DIFFRACTION113( CHAIN Q AND RESID 3:24 )Q3 - 24
114X-RAY DIFFRACTION114( CHAIN Q AND RESID 25:53 )Q25 - 53
115X-RAY DIFFRACTION115( CHAIN Q AND RESID 54:69 )Q54 - 69
116X-RAY DIFFRACTION116( CHAIN Q AND RESID 70:114 )Q70 - 114
117X-RAY DIFFRACTION117( CHAIN Q AND RESID 115:131 )Q115 - 131
118X-RAY DIFFRACTION118( CHAIN Q AND RESID 132:157 )Q132 - 157
119X-RAY DIFFRACTION119( CHAIN Q AND RESID 158:168 )Q158 - 168
120X-RAY DIFFRACTION120( CHAIN Q AND RESID 169:182 )Q169 - 182
121X-RAY DIFFRACTION121( CHAIN Q AND RESID 183:192 )Q183 - 192
122X-RAY DIFFRACTION122( CHAIN R AND RESID 3:24 )R3 - 24
123X-RAY DIFFRACTION123( CHAIN R AND RESID 25:91 )R25 - 91
124X-RAY DIFFRACTION124( CHAIN R AND RESID 92:104 )R92 - 104
125X-RAY DIFFRACTION125( CHAIN R AND RESID 105:131 )R105 - 131
126X-RAY DIFFRACTION126( CHAIN R AND RESID 132:168 )R132 - 168
127X-RAY DIFFRACTION127( CHAIN R AND RESID 169:182 )R169 - 182
128X-RAY DIFFRACTION128( CHAIN R AND RESID 183:192 )R183 - 192
129X-RAY DIFFRACTION129( CHAIN S AND RESID 3:27 )S3 - 27
130X-RAY DIFFRACTION130( CHAIN S AND RESID 28:82 )S28 - 82
131X-RAY DIFFRACTION131( CHAIN S AND RESID 83:104 )S83 - 104
132X-RAY DIFFRACTION132( CHAIN S AND RESID 105:131 )S105 - 131
133X-RAY DIFFRACTION133( CHAIN S AND RESID 132:157 )S132 - 157
134X-RAY DIFFRACTION134( CHAIN S AND RESID 158:182 )S158 - 182
135X-RAY DIFFRACTION135( CHAIN S AND RESID 183:193 )S183 - 193
136X-RAY DIFFRACTION136( CHAIN T AND RESID 3:24 )T3 - 24
137X-RAY DIFFRACTION137( CHAIN T AND RESID 25:69 )T25 - 69
138X-RAY DIFFRACTION138( CHAIN T AND RESID 70:104 )T70 - 104
139X-RAY DIFFRACTION139( CHAIN T AND RESID 105:131 )T105 - 131
140X-RAY DIFFRACTION140( CHAIN T AND RESID 132:157 )T132 - 157
141X-RAY DIFFRACTION141( CHAIN T AND RESID 158:182 )T158 - 182
142X-RAY DIFFRACTION142( CHAIN T AND RESID 183:192 )T183 - 192
143X-RAY DIFFRACTION143( CHAIN U AND RESID 2:24 )U2 - 24
144X-RAY DIFFRACTION144( CHAIN U AND RESID 25:36 )U25 - 36
145X-RAY DIFFRACTION145( CHAIN U AND RESID 37:53 )U37 - 53
146X-RAY DIFFRACTION146( CHAIN U AND RESID 54:82 )U54 - 82
147X-RAY DIFFRACTION147( CHAIN U AND RESID 83:91 )U83 - 91
148X-RAY DIFFRACTION148( CHAIN U AND RESID 92:104 )U92 - 104
149X-RAY DIFFRACTION149( CHAIN U AND RESID 105:131 )U105 - 131
150X-RAY DIFFRACTION150( CHAIN U AND RESID 132:157 )U132 - 157
151X-RAY DIFFRACTION151( CHAIN U AND RESID 158:168 )U158 - 168
152X-RAY DIFFRACTION152( CHAIN U AND RESID 169:182 )U169 - 182
153X-RAY DIFFRACTION153( CHAIN U AND RESID 183:192 )U183 - 192
154X-RAY DIFFRACTION154( CHAIN V AND RESID 3:36 )V3 - 36
155X-RAY DIFFRACTION155( CHAIN V AND RESID 37:114 )V37 - 114
156X-RAY DIFFRACTION156( CHAIN V AND RESID 115:182 )V115 - 182
157X-RAY DIFFRACTION157( CHAIN V AND RESID 183:193 )V183 - 193
158X-RAY DIFFRACTION158( CHAIN W AND RESID 18:53 )W18 - 53
159X-RAY DIFFRACTION159( CHAIN W AND RESID 54:104 )W54 - 104
160X-RAY DIFFRACTION160( CHAIN W AND RESID 105:131 )W105 - 131
161X-RAY DIFFRACTION161( CHAIN W AND RESID 132:157 )W132 - 157
162X-RAY DIFFRACTION162( CHAIN W AND RESID 158:168 )W158 - 168
163X-RAY DIFFRACTION163( CHAIN W AND RESID 169:182 )W169 - 182
164X-RAY DIFFRACTION164( CHAIN W AND RESID 183:191 )W183 - 191
165X-RAY DIFFRACTION165( CHAIN X AND RESID 3:25 )X3 - 25
166X-RAY DIFFRACTION166( CHAIN X AND RESID 26:104 )X26 - 104
167X-RAY DIFFRACTION167( CHAIN X AND RESID 105:131 )X105 - 131
168X-RAY DIFFRACTION168( CHAIN X AND RESID 132:168 )X132 - 168
169X-RAY DIFFRACTION169( CHAIN X AND RESID 169:191 )X169 - 191
170X-RAY DIFFRACTION170( CHAIN Y AND RESID 3:25 )Y3 - 25
171X-RAY DIFFRACTION171( CHAIN Y AND RESID 26:82 )Y26 - 82
172X-RAY DIFFRACTION172( CHAIN Y AND RESID 83:131 )Y83 - 131
173X-RAY DIFFRACTION173( CHAIN Y AND RESID 132:168 )Y132 - 168
174X-RAY DIFFRACTION174( CHAIN Y AND RESID 169:192 )Y169 - 192
175X-RAY DIFFRACTION175( CHAIN Z AND RESID 3:24 )Z3 - 24
176X-RAY DIFFRACTION176( CHAIN Z AND RESID 25:36 )Z25 - 36
177X-RAY DIFFRACTION177( CHAIN Z AND RESID 37:53 )Z37 - 53
178X-RAY DIFFRACTION178( CHAIN Z AND RESID 54:91 )Z54 - 91
179X-RAY DIFFRACTION179( CHAIN Z AND RESID 92:104 )Z92 - 104
180X-RAY DIFFRACTION180( CHAIN Z AND RESID 105:131 )Z105 - 131
181X-RAY DIFFRACTION181( CHAIN Z AND RESID 132:157 )Z132 - 157
182X-RAY DIFFRACTION182( CHAIN Z AND RESID 158:168 )Z158 - 168
183X-RAY DIFFRACTION183( CHAIN Z AND RESID 169:182 )Z169 - 182
184X-RAY DIFFRACTION184( CHAIN Z AND RESID 183:192 )Z183 - 192
185X-RAY DIFFRACTION185( CHAIN a AND RESID 3:36 )a3 - 36
186X-RAY DIFFRACTION186( CHAIN a AND RESID 37:53 )a37 - 53
187X-RAY DIFFRACTION187( CHAIN a AND RESID 54:104 )a54 - 104
188X-RAY DIFFRACTION188( CHAIN a AND RESID 105:131 )a105 - 131
189X-RAY DIFFRACTION189( CHAIN a AND RESID 132:157 )a132 - 157
190X-RAY DIFFRACTION190( CHAIN a AND RESID 158:182 )a158 - 182
191X-RAY DIFFRACTION191( CHAIN a AND RESID 183:191 )a183 - 191
192X-RAY DIFFRACTION192( CHAIN b AND RESID 3:24 )b3 - 24
193X-RAY DIFFRACTION193( CHAIN b AND RESID 25:53 )b25 - 53
194X-RAY DIFFRACTION194( CHAIN b AND RESID 54:82 )b54 - 82
195X-RAY DIFFRACTION195( CHAIN b AND RESID 83:104 )b83 - 104
196X-RAY DIFFRACTION196( CHAIN b AND RESID 105:131 )b105 - 131
197X-RAY DIFFRACTION197( CHAIN b AND RESID 132:157 )b132 - 157
198X-RAY DIFFRACTION198( CHAIN b AND RESID 158:167 )b158 - 167
199X-RAY DIFFRACTION199( CHAIN b AND RESID 168:182 )b168 - 182
200X-RAY DIFFRACTION200( CHAIN b AND RESID 183:192 )b183 - 192

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万見について

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お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月:コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか? / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例:em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る