+Open data
-Basic information
Entry | Database: PDB / ID: 7lvf | ||||||
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Title | Jug R 2 Leader Sequence Residues 1-57 | ||||||
Components | Vicilin Jug r 2.0101 | ||||||
Keywords | ALLERGEN / Seed storage | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Juglans regia (English walnut) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Mueller, G.A. / Foo, A.C.Y. / DeRose, E.F. | ||||||
Funding support | United States, 1items
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Citation | Journal: J.Agric.Food Chem. / Year: 2022 Title: Structure, Immunogenicity, and IgE Cross-Reactivity among Walnut and Peanut Vicilin-Buried Peptides. Authors: Foo, A.C.Y. / Nesbit, J.B. / Gipson, S.A.Y. / Cheng, H. / Bushel, P. / DeRose, E.F. / Schein, C.H. / Teuber, S.S. / Hurlburt, B.K. / Maleki, S.J. / Mueller, G.A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 7lvf.cif.gz | 364.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb7lvf.ent.gz | 310 KB | Display | PDB format |
PDBx/mmJSON format | 7lvf.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/lv/7lvf ftp://data.pdbj.org/pub/pdb/validation_reports/lv/7lvf | HTTPS FTP |
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-Related structure data
Related structure data | 7lveC 7lvgC 7lxkC C: citing same article (ref.) |
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Similar structure data | |
Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 7214.675 Da / Num. of mol.: 1 / Fragment: Leader sequence, residues 1-57 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Juglans regia (English walnut) / Production host: Escherichia coli BL21 (bacteria) / Strain (production host): BL21 / References: UniProt: Q9SEW4 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Type: solution Contents: 50 uM Sodium trimethylsilylpropanesulfonate, 90% H2O/10% D2O Details: 90% PBS pH 7.4, 10% D2, 50 uM DSS Reference Standard Label: 13C_15N_JR21 / Solvent system: 90% H2O/10% D2O |
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Sample | Conc.: 50 uM / Component: Sodium trimethylsilylpropanesulfonate / Isotopic labeling: natural abundance |
Sample conditions | Details: 146 mM NaCl (8g/L) 2.68 mM KCl (0.2g/L) 4.2 mM Na2HPO4.7H20 (1.15g/L) 1.47 mM KH2PO4 (0.2g/L) Ionic strength: 150 mM / Label: PBS / pH: 7.4 / Pressure: 1 atm / Temperature: 298.15 K |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 3 | |||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | |||||||||||||||||||||
NMR ensemble | Conformer selection criteria: all calculated structures submitted Conformers calculated total number: 20 / Conformers submitted total number: 20 |