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- PDB-7kqv: Crystal Structure of aldehyde dehydrogenase (ChALDH) from Cladosp... -
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Open data
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Basic information
Entry | Database: PDB / ID: 7kqv | ||||||
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Title | Crystal Structure of aldehyde dehydrogenase (ChALDH) from Cladosporium herbarum | ||||||
![]() | Aldehyde dehydrogenase | ||||||
![]() | OXIDOREDUCTASE / Aldehyde dehydrogenase / ChALDH / Cladosporium herbarum | ||||||
Function / homology | ![]() glyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity / aldehyde dehydrogenase (NAD+) / aldehyde dehydrogenase (NAD+) activity / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Lee, S.G. / Jez, J.M. | ||||||
![]() | ![]() Title: Biochemical and clinical studies of putative allergens to assess what distinguishes them from other non-allergenic proteins in the same family. Authors: Glenn, K.C. / Silvanovich, A. / Lee, S.G. / Allen, A. / Park, S. / Dunn, S.E. / Kessenich, C. / Meng, C. / Vicini, J.L. / Jez, J.M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 413.2 KB | Display | ![]() |
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PDB format | ![]() | 275.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 472.1 KB | Display | ![]() |
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Full document | ![]() | 543.2 KB | Display | |
Data in XML | ![]() | 69.1 KB | Display | |
Data in CIF | ![]() | 92.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 7krgC ![]() 5fhzS S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 53612.785 Da / Num. of mol.: 4 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.37 Å3/Da / Density % sol: 48.11 % |
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Crystal grow | Temperature: 277 K / Method: vapor diffusion, hanging drop / pH: 6.2 Details: 20% PEG 100, 100 mM sodium/potassium phosphate, pH 6.2, 200 mM NaCl |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315 / Detector: CCD / Date: Jul 10, 2015 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.979 Å / Relative weight: 1 |
Reflection | Resolution: 3.18→50 Å / Num. obs: 33530 / % possible obs: 100 % / Redundancy: 2.9 % / Biso Wilson estimate: 79.3 Å2 / Rpim(I) all: 0.082 / Rrim(I) all: 0.203 / Net I/σ(I): 15.9 |
Reflection shell | Resolution: 3.19→3.24 Å / Mean I/σ(I) obs: 2.05 / Num. unique obs: 1643 / CC1/2: 0.842 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 5fhz Resolution: 3.18→49.7 Å / SU ML: 0.3571 / Cross valid method: FREE R-VALUE / σ(F): 1.35 / Phase error: 31.8598 / Stereochemistry target values: CDL v1.2
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 83.75 Å2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 3.18→49.7 Å
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Refine LS restraints |
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LS refinement shell |
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