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Open data
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Basic information
Entry | Database: PDB / ID: 7ed0 | ||||||||||||
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Title | Transferase from Mycobacterium tuberculosis | ||||||||||||
![]() | 4'-phosphopantetheinyl transferase superfamily protein | ||||||||||||
![]() | TRANSFERASE / phosphopantetheine transferase | ||||||||||||
Function / homology | COENZYME A / : ![]() | ||||||||||||
Biological species | ![]() ![]() | ||||||||||||
Method | ![]() ![]() ![]() | ||||||||||||
![]() | Kim, D.-G. / Lee, B.-J. / Lee, S.J. | ||||||||||||
Funding support | ![]()
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![]() | ![]() Title: Transferase from Mycobacterium tuberculosis Authors: Kim, D.-G. / Lee, B.-J. / Lee, S.J. | ||||||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 62 KB | Display | ![]() |
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PDB format | ![]() | 43 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1.3 MB | Display | ![]() |
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Full document | ![]() | 1.3 MB | Display | |
Data in XML | ![]() | 11.3 KB | Display | |
Data in CIF | ![]() | 15.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 7ed1C ![]() 7ed2C ![]() 4qjkS S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 25808.643 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() | ||||
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#2: Chemical | ChemComp-COA / | ||||
#3: Chemical | #4: Water | ChemComp-HOH / | Has ligand of interest | Y | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.94 Å3/Da / Density % sol: 58.16 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, sitting drop Details: 30% (w/v) PEG 8000, 100 mM Sodium acetate/acetic acid, pH 4.5, 200 mM Lithium sulfate |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() |
Detector | Type: ADSC QUANTUM 270 / Detector: CCD / Date: Sep 30, 2014 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9794 Å / Relative weight: 1 |
Reflection | Resolution: 1.65→30 Å / Num. obs: 35409 / % possible obs: 99.7 % / Redundancy: 5.2 % / CC1/2: 0.999 / Net I/σ(I): 24.16 |
Reflection shell | Resolution: 1.65→1.68 Å / Num. unique obs: 1728 / CC1/2: 0.705 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 4qjk Resolution: 1.65→25.83 Å / Cor.coef. Fo:Fc: 0.95 / Cor.coef. Fo:Fc free: 0.928 / SU B: 3.129 / SU ML: 0.097 / Cross valid method: THROUGHOUT / σ(F): 0 / ESU R: 0.104 / ESU R Free: 0.107 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso max: 75.03 Å2 / Biso mean: 25.415 Å2 / Biso min: 14.68 Å2
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Refinement step | Cycle: final / Resolution: 1.65→25.83 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.65→1.693 Å / Rfactor Rfree error: 0 / Total num. of bins used: 20
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