[English] 日本語
Yorodumi
- PDB-6whl: The crystal structure of a beta-lactamase from Legionella pneumop... -

+
Open data


ID or keywords:

Loading...

-
Basic information

Entry
Database: PDB / ID: 6whl
TitleThe crystal structure of a beta-lactamase from Legionella pneumophila str. Paris
ComponentsBeta-lactamase
KeywordsHYDROLASE / beta lactamase / Structural Genomics / Center for Structural Genomics of Infectious Diseases / CSGID
Function / homology
Function and homology information


penicillin binding / antibiotic catabolic process / beta-lactamase activity / beta-lactamase / response to antibiotic
Similarity search - Function
Beta-lactamase, class-D active site / Beta-lactamase class-D active site. / Penicillin-binding protein, transpeptidase / Penicillin binding protein transpeptidase domain / Beta-lactamase / DD-peptidase/beta-lactamase superfamily / Beta-lactamase/transpeptidase-like / 3-Layer(aba) Sandwich / Alpha Beta
Similarity search - Domain/homology
Beta-lactamase / Beta-lactamase
Similarity search - Component
Biological speciesLegionella pneumophila (bacteria)
MethodX-RAY DIFFRACTION / SYNCHROTRON / SAD / Resolution: 2.3 Å
AuthorsTan, K. / Wu, R. / Endres, M. / Joachimiak, A. / Center for Structural Genomics of Infectious Diseases (CSGID)
Funding support United States, 1items
OrganizationGrant numberCountry
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)HHSN272201700060C United States
CitationJournal: To Be Published
Title: The crystal structure of a beta-lactamase from Legionella pneumophila str. Paris
Authors: Tan, K. / Wu, R. / Endres, M. / Joachimiak, A.
History
DepositionApr 8, 2020Deposition site: RCSB / Processing site: RCSB
Revision 1.0Apr 22, 2020Provider: repository / Type: Initial release

-
Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

-
Assembly

Deposited unit
A: Beta-lactamase
B: Beta-lactamase
C: Beta-lactamase
D: Beta-lactamase
E: Beta-lactamase
F: Beta-lactamase
G: Beta-lactamase
H: Beta-lactamase
I: Beta-lactamase
J: Beta-lactamase
K: Beta-lactamase
L: Beta-lactamase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)350,69424
Polymers349,58912
Non-polymers1,10512
Water9,530529
1
A: Beta-lactamase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)29,2252
Polymers29,1321
Non-polymers921
Water181
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
2
B: Beta-lactamase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)29,2252
Polymers29,1321
Non-polymers921
Water181
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
3
C: Beta-lactamase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)29,3173
Polymers29,1321
Non-polymers1842
Water181
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
4
D: Beta-lactamase


Theoretical massNumber of molelcules
Total (without water)29,1321
Polymers29,1321
Non-polymers00
Water181
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
5
E: Beta-lactamase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)29,2252
Polymers29,1321
Non-polymers921
Water181
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
6
F: Beta-lactamase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)29,2252
Polymers29,1321
Non-polymers921
Water181
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
7
G: Beta-lactamase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)29,2252
Polymers29,1321
Non-polymers921
Water181
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
8
H: Beta-lactamase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)29,2252
Polymers29,1321
Non-polymers921
Water181
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
9
I: Beta-lactamase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)29,2252
Polymers29,1321
Non-polymers921
Water181
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
10
J: Beta-lactamase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)29,2252
Polymers29,1321
Non-polymers921
Water181
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
11
K: Beta-lactamase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)29,2252
Polymers29,1321
Non-polymers921
Water181
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
12
L: Beta-lactamase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)29,2252
Polymers29,1321
Non-polymers921
Water181
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Unit cell
Length a, b, c (Å)80.222, 178.196, 143.749
Angle α, β, γ (deg.)90.000, 97.038, 90.000
Int Tables number4
Space group name H-MP1211
Space group name HallP2yb
Symmetry operation#1: x,y,z
#2: -x,y+1/2,-z

-
Components

#1: Protein
Beta-lactamase /


Mass: 29132.418 Da / Num. of mol.: 12
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Legionella pneumophila (bacteria) / Strain: Paris / Gene: bla, NCTC12000_01749 / Plasmid: pMCSG53 / Production host: Escherichia coli (E. coli) / Strain (production host): BL21-Gold(DE3)
References: UniProt: A0A378KDC5, UniProt: A0A3A6V665*PLUS, beta-lactamase
#2: Chemical
ChemComp-GOL / GLYCEROL / GLYCERIN / PROPANE-1,2,3-TRIOL / Glycerol


Mass: 92.094 Da / Num. of mol.: 12 / Source method: obtained synthetically / Formula: C3H8O3
#3: Water ChemComp-HOH / water / Water


Mass: 18.015 Da / Num. of mol.: 529 / Source method: isolated from a natural source / Formula: H2O
Has ligand of interestY

-
Experimental details

-
Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

-
Sample preparation

CrystalDensity Matthews: 2.94 Å3/Da / Density % sol: 58.1 %
Crystal growTemperature: 296 K / Method: vapor diffusion, hanging drop / Details: 0.2M ammonium tartrate dibasic, 20% (w/v) PEG 3350

-
Data collection

DiffractionMean temperature: 100 K / Serial crystal experiment: N
Diffraction sourceSource: SYNCHROTRON / Site: APS / Beamline: 19-ID / Wavelength: 0.97918 Å
DetectorType: DECTRIS PILATUS3 S 6M / Detector: PIXEL / Date: Nov 13, 2018
RadiationMonochromator: Si 111 / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 0.97918 Å / Relative weight: 1
ReflectionResolution: 2.3→42.6 Å / Num. obs: 176499 / % possible obs: 98.7 % / Observed criterion σ(I): -3 / Redundancy: 3.1 % / Biso Wilson estimate: 29.96 Å2 / CC1/2: 0.991 / CC star: 0.998 / Rmerge(I) obs: 0.057 / Rpim(I) all: 0.037 / Rrim(I) all: 0.068 / Χ2: 0.708 / Net I/σ(I): 15.96
Reflection shellResolution: 2.3→2.34 Å / Redundancy: 3.1 % / Rmerge(I) obs: 0.842 / Mean I/σ(I) obs: 1.53 / Num. unique obs: 8765 / CC1/2: 0.551 / CC star: 0.843 / Rpim(I) all: 0.56 / Rrim(I) all: 1.014 / Χ2: 0.884 / % possible all: 98.9

-
Processing

Software
NameVersionClassification
SBC-Collectdata collection
PHENIX1.17.1_3660refinement
HKL-3000data scaling
HKL-3000data reduction
HKL-3000phasing
RefinementMethod to determine structure: SAD / Resolution: 2.3→42.52 Å / SU ML: 0.2579 / Cross valid method: FREE R-VALUE / σ(F): 1.34 / Phase error: 22.2908
RfactorNum. reflection% reflectionSelection details
Rfree0.2081 7619 4.89 %random
Rwork0.1634 ---
obs0.1655 155665 87.87 %-
Solvent computationShrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å
Displacement parametersBiso mean: 39.62 Å2
Refinement stepCycle: LAST / Resolution: 2.3→42.52 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms24048 0 72 529 24649
Refine LS restraints
Refine-IDTypeDev idealNumber
X-RAY DIFFRACTIONf_bond_d0.007424744
X-RAY DIFFRACTIONf_angle_d0.894933447
X-RAY DIFFRACTIONf_chiral_restr0.0473504
X-RAY DIFFRACTIONf_plane_restr0.00534227
X-RAY DIFFRACTIONf_dihedral_angle_d18.24049069
LS refinement shell
Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
2.3-2.330.27791130.22072405X-RAY DIFFRACTION43.11
2.33-2.350.29891450.2292798X-RAY DIFFRACTION49.86
2.35-2.380.30371600.22323112X-RAY DIFFRACTION55.84
2.38-2.410.26681700.21833333X-RAY DIFFRACTION59.44
2.41-2.440.27981680.21013506X-RAY DIFFRACTION62.41
2.44-2.480.25062140.22333677X-RAY DIFFRACTION65.76
2.48-2.510.28791910.22633926X-RAY DIFFRACTION69.47
2.51-2.550.27141850.21564120X-RAY DIFFRACTION73.99
2.55-2.590.27112410.21224843X-RAY DIFFRACTION85.49
2.59-2.630.26422920.21425306X-RAY DIFFRACTION95.84
2.63-2.680.24143020.21015513X-RAY DIFFRACTION97.9
2.68-2.730.24642890.19555501X-RAY DIFFRACTION98.72
2.73-2.780.25533180.19455511X-RAY DIFFRACTION98.78
2.78-2.840.24452770.19475533X-RAY DIFFRACTION98.79
2.84-2.90.25432740.19915539X-RAY DIFFRACTION98.89
2.9-2.970.25373060.18975615X-RAY DIFFRACTION99.13
2.97-3.040.26792900.18385465X-RAY DIFFRACTION98.41
3.04-3.120.22032820.18975439X-RAY DIFFRACTION96.8
3.12-3.210.23052780.18235584X-RAY DIFFRACTION99.15
3.21-3.320.22492860.18285591X-RAY DIFFRACTION99.53
3.32-3.440.21852700.17345557X-RAY DIFFRACTION99.39
3.44-3.570.1932950.15715579X-RAY DIFFRACTION99.21
3.57-3.740.23040.14745552X-RAY DIFFRACTION99.1
3.74-3.930.1782580.13865577X-RAY DIFFRACTION98.9
3.93-4.180.17443080.13175488X-RAY DIFFRACTION97.69
4.18-4.50.1553040.11685621X-RAY DIFFRACTION99.73
4.5-4.950.15452850.11385588X-RAY DIFFRACTION99.44
4.95-5.670.1652630.12895593X-RAY DIFFRACTION98.52
5.67-7.140.19672690.15185570X-RAY DIFFRACTION98.18
7.14-42.520.16442820.14695604X-RAY DIFFRACTION97.61
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
18.16521654214-2.02471243551-1.233845165953.881668561090.2559648476112.53932776820.1197488893510.51792015568-0.154631612434-0.2763075779860.01935939776570.2602689902810.194517351201-0.088027267024-0.1306476016780.206043327576-0.018112839163-0.05778095834810.1416698582730.01008783354350.1275853754667.0145610699839.778831286285.0646363169
24.587520410066.237466269341.380299435989.035322865481.241873543976.99441736127-0.1248978766630.727859178264-0.312243528867-0.7759396291780.223389406261-0.4187343765090.1170102866840.799387878889-0.1192179054220.4327237447350.171996484180.135055430960.477658172320.0207625452520.31088260270321.763632561847.868745490563.0525700884
31.575625769562.009730890461.12317867163.243898271840.0341651913713.676053396430.05049166720780.223152968179-0.0685795663875-0.500222504760.133206888203-0.06505709403760.01205290323150.323428037319-0.1452362565450.4366152567790.0412021060199-0.02050415165540.1888051576890.03357408930280.142222890496.2783824684553.839234003564.5132223453
44.143255809580.0396382832552-0.5020707950246.57353068262-2.818802989122.724641053580.0154572600071-0.130204133527-0.1244072085970.07740718356010.1534017901040.561172900093-0.327060761436-0.437352260734-0.1466663012690.2512560631720.06145692753990.03131673622520.1539646814610.009147619971770.177720808226-3.6285329309658.034924153779.9737836357
51.97037623228-0.870207440227-0.7195460483982.00130731155-0.4778951676082.296604336740.192012052130.2162380193880.0954764724806-0.537548356162-0.1435621291010.106641789829-0.1852183104050.0012719264111-0.06116994979820.4249516775070.0501717528381-0.005565350087190.1232956607580.002246423579050.1575747984532.6781502248560.088690757264.2018107827
61.42621187048-0.141312298927-0.5293334149281.66767927460.2943931428041.831786268480.220575873265-0.0378839076696-0.00427398338626-0.486769525773-0.2328347020390.2640984764920.102716510199-0.10686728525-0.00333570733730.4229935556860.0388038848952-0.05575326643250.1240561901860.006271650158120.1483094108838.4887333192949.052486519271.4312289623
75.263233832770.7144388915390.5816158688412.591411312270.5419495393873.705554345290.0907205094726-0.141879173733-0.272851062898-0.429895073233-0.0741691043375-0.2305249455540.1881691909290.345585517282-0.04678666339020.327456145470.05794193760680.04210326268480.1572236845530.01253545522630.13097203544916.663201771946.067697474471.9738526251
86.06756448358-3.972591296695.495766187453.91918579577-6.139623943869.88692088025-0.04710297461050.1010653227620.216216139024-0.2228581282870.03469551893470.1042823888190.08296298404370.0154485884829-0.02393321403770.261433556376-0.104229925817-0.05613305420010.209688003191-0.01360164875320.253879372747-1.5947869202527.117182443494.8843180112
91.641604092760.7265023588170.05133050031764.43115630145-0.6299047559922.22773925034-0.1839084970930.09401150403710.07166260060090.0579942693760.0251222399190.237694009826-0.113249789096-0.4562606780160.1665171695670.09324827685540.040378341921-0.009891295962040.229393768586-0.03727701118580.258383671127-23.986843479116.495887183897.3553898205
102.71939418558-0.007124572975850.1408868963732.89740258730.3645462340652.41686834283-0.1995081883160.1066404411780.06568253493620.124891641754-0.09960437132150.450870527671-0.00329861443706-0.5378428054920.2577103936380.101988116587-0.007748039052470.004288527010.254292871776-0.03069230630370.266012777933-27.566989865514.343976096796.1007820247
112.45095228323-0.0986050970931-0.7652176855051.64501377922-0.008474674401031.6634916177-0.02623615031250.09849070252810.201134358387-0.122016132337-0.05727344152880.189411838347-0.270592379295-0.1844838022360.04740519799720.1984210264560.0141731685122-0.06462202976150.0885279277921-0.01535430380560.185008539696-15.43439080721.734366200895.3385241929
124.21369054318-2.140640001995.378729100522.8688740087-1.502090917647.71466077397-0.1830281952550.4004441050090.1628638093460.0366743830631-0.00467054290764-0.370916369588-0.3119455671070.3315509736670.2021373375850.134313149329-0.01261199218990.01455892910190.1587567158020.02407627034810.191436434753-0.22503391864616.37556805589.4415664716
139.095841723525.38502536663-3.961381634757.74403344883-2.307572791646.21433867241-0.0934045258680.2739192476120.195571908574-0.408693232741-0.01350791776210.171845543578-0.1308890936410.2916975067030.02711519981160.485808056317-0.03826060195950.006729326198930.1842370950350.02184056041370.166157103979-10.4570871773-1.4903495714970.4941414269
142.227623987330.03468682725770.2589311955042.684572128760.2407298883524.49700730535-0.05122374799870.375624414988-0.0389004316716-0.605670592205-0.096038900551-0.2336199866650.2807548194920.203569986330.1200940103620.2910521956350.01076910709490.09995638633390.194475823196-0.05140848942480.2476981023394.39975444529-5.1262253611277.431995277
152.41581319928-0.3786537579970.8043364738261.574769197680.7878050525744.03927955047-0.1037790261370.00813348868832-0.1023910850860.0730085995176-0.0321576519924-0.6696210662890.08486432961350.4648676821660.08786489899690.1155969402860.0190934252864-0.001033267385580.2032466126540.04843152627530.34226925918610.6322459784-1.6799035642194.8890854537
161.68478573928-0.5420148920910.6367191478291.743395179110.3918417097652.9697198588-0.04022777712770.49757642524-0.310043670081-0.4412261478220.0502279330071-0.5875132705540.4698606283230.689885709544-0.02827261767660.3609946957880.04488421547910.1347455555870.309478049484-0.02541126349770.40112752924810.4676343685-9.3252010372578.823111153
172.41137389814-0.9243435808040.2925255514121.54118302665-0.237662149481.75861434638-0.023967964704-0.0937635767402-0.245443531492-0.0457550905230.0916573641345-0.03461955118670.269070198289-0.0750708401307-0.05482583467790.251227853619-0.0751321180710.03587125038330.126989190873-0.0202951614890.230869916948-6.23670828342-9.1137865601788.3265182459
185.804232041470.746770766930.4737133206434.022257543150.437708254183.52394063637-0.01066031299890.5738323863260.125786992101-0.649963273431-0.022745231111-0.9249481398020.02429563894580.988573421783-0.002155435579340.359725144090.01401348482030.1267025415920.3615189853290.04800483090890.3322239134658.107947963253.8331297056575.4960186251
194.623839106630.367758488833-0.5554249226852.28782794133-0.4055800078613.190167859550.04154991596950.04987004687950.108565047617-0.248167818137-0.164887713161-0.0159026745231-0.05407061470050.1375822617340.1114575699190.297868102785-0.05288061729820.05287299686680.1432949826940.007332700040440.12907691678-3.347676577813.2320136148777.9757488828
208.493361725150.38309347062-1.184706979982.16988552471-0.3325019105553.330647856410.01905182960710.2520681499050.162492467197-0.172984844415-0.08964838413340.0405314713095-0.0183688630925-0.1599653050050.05059484685990.239271070732-0.03486560854850.02558817616680.144448297122-0.001201990246910.146005484054-12.08753749686.6389956119179.3025931416
218.72938589575-5.52964198802-3.653710173334.162316926883.665506221124.3220188814-0.00165388404214-0.1935689361720.1159393461310.138264243297-0.00643213890247-0.0765677322987-0.145792602932-0.200649431621-0.04050856948580.444941958162-0.0384948035533-0.01469990217910.2592025363760.0094092213250.167989705569-16.4108351578-0.47346651413663.0402526692
222.05138059316-0.54426927546-0.6740017677973.524401823710.1285017636473.65208068568-0.139530296264-0.571335009952-0.06468604634740.192740161623-0.1326064427170.240946839616-0.538005212528-0.3456295261530.2856860689060.3398509253630.1312055530560.03733205118930.434043927817-0.002552175143960.252211070825-31.65516691860.82817607291756.2160957723
234.063082735410.0769264052918-1.105574124546.29033905949-0.3325337486771.03276865977-0.0922960703539-0.004990776615870.30032000975-0.343572998753-0.1314617025280.779278630168-0.805541828521-0.7112989832310.1984962044130.5697175239330.234352773076-0.1240838066180.50275505575-0.1288491980980.317524918968-39.48369858262.5721791859837.5152491612
243.608906472290.92944074034-0.23957849125.06497210756-0.2597948061370.0247819493893-0.056562294745-0.109423795150.571476534653-0.162698435862-0.1344429160470.465793751195-0.88417659422-0.5745496242760.179234706930.6723466647870.218622154239-0.09824165716420.366824074832-0.06783563032910.350019320676-33.700958931610.209333089740.1167846942
252.26673450870.6347370033-0.44224262232.668237367580.1731819741392.247431470530.0229309560722-0.479095692217-0.2290611820710.298288246666-0.1306391936270.633127932993-0.276232964719-0.8936202081810.1510076074810.3402715850710.07299138080160.07858270433790.522809629509-0.03827995684830.325692049969-37.4548133159-2.7069009489954.2376996439
263.18310904920.9480808418020.7130701654052.419227471690.6938541376932.14251667991-0.06710506044260.159293994271-0.10235811206-0.1953711606540.1142354104520.0675960687324-0.600668406171-0.0308341960676-0.004801771232640.4143278545870.01208039975660.003736674443090.19877183509-0.01069007648280.162318899985-22.1217762942-0.36954313225245.4779946418
274.44679132562-0.898507499496-0.5583266568554.660716787591.285447807892.80226727222-0.0860615336258-0.255554801230.3542863218950.285810435613-0.0792071649910.46288038079-0.61145221111-0.5687232774140.1195527819390.6282928102740.1166325677270.007916955582490.344178611428-0.05912417511970.166584886832-26.0094716898.3739055358858.101659862
283.30089876313-3.81901845913-1.190567035024.865773753851.078878850932.48323805085-0.33592677097-0.5918874547720.3325263684720.2664205083380.245001640442-0.100585495428-0.6888645853580.212071562630.0826655269310.564419127358-0.0970850190673-0.02521746455970.293919869827-0.04168022663050.217636628632-12.34287168897.1724002116254.4907457724
292.475327074920.2203084616640.09783539586616.585302873450.8521670738521.130448264840.1094353797250.007741127845020.387199980966-0.1888443705660.0256314917958-0.166490345287-0.2880483634730.0463222471153-0.05161647106541.34816175347-0.0135805078731-0.1311792858550.279987241878-0.02047513036520.695386507345-16.791105042930.470710281739.6903591711
301.547288888391.29892925850.3374338680231.62768780434-0.3922546012891.05737035752-0.0882589020849-0.04826855607350.378173669213-0.0780533654813-0.01896533007820.289122043266-0.5478090304190.1195190391290.2238165149681.01313409069-0.4343433764280.0193138515280.408234018887-0.104028134080.404573812662-1.5530179468222.841571358738.165088222
312.39048027076-1.29728899143-0.4417741084423.4684201573-1.989007708914.53171285565-0.160507187175-0.1743506896690.180978327375-0.3801491584370.102005310766-0.361418670612-0.3438087719850.9116784819590.1058260848080.612398382785-0.2816091062050.0954395781110.573936326177-0.1402728526530.2858327381515.149233878834.4510681768834.4994173907
322.94843337364-1.50365920528-1.435444927654.09698396512-1.117036361783.42664589513-0.265329244119-0.2864885519580.1534375011530.1390816546850.183424402282-0.0678822033016-0.3978018533630.7286289732320.0002704836508590.509759541939-0.2430598950690.08853183205510.471510934358-0.07907358195810.2438366732150.08551869787915.0039394315143.2006876707
330.402680724002-0.332497864292-0.1628466710572.08575870029-0.3221002049160.179919873373-0.0623445043363-0.04848608549990.385129408372-0.131632003610.031951056962-0.326612928357-0.5248653902270.37030037358-0.09429722384281.08709947231-0.7577576403780.1114314526610.612188375075-0.1867046611820.481847254878.4588364376820.711122919236.3991475277
340.525322654142-0.29707927161-0.4574599837161.278380876590.3177509885090.889946029108-0.00124634969894-0.02069497375230.271429047138-0.2249359932670.0488270516407-0.208050609059-0.8248295548280.346912941081-0.03722600942181.1803325476-0.237039565595-0.0089757705050.33911194115-0.0504647791040.317653152869-8.6234377960620.204364023838.8235294309
355.88578942531-0.1088884485042.373025217090.8634326511620.2845638960612.40177019040.0667984312324-0.2693848865420.573046878331-0.318958419214-0.1594068684960.0908761172243-0.615528710215-0.0962515196440.1097370828581.087725253440.031689478367-0.06111859095550.353273825524-0.07828903550450.359396220353-20.834485827120.284706862744.801830923
362.766866727890.348789681717-3.554031723851.31762795257-0.4815474089846.83293008082-0.1567785821070.242244303315-0.863162740902-0.161186377661-0.1416578237880.2429137804661.0918533074-0.01428160310430.3129194024490.6066521134060.0129374995780.03133495065840.244767569776-0.08047213580280.490224126507-26.059200315454.6974193533170.467014922
372.12132361568-1.70099313539-0.9866956447012.73587221605-0.4685637044911.61051195207-0.1485328751410.0250455870369-0.416271244303-0.148611268626-0.1113437474990.2506775898820.5207702863130.1805011797330.2204421292630.4386701515210.20717406530.07492880494720.2399294165060.0703490671380.217537406774-11.381744347360.1559288884176.130447009
384.545277993160.846828240849-1.35352692235.71674346991-1.009762382123.55783372416-0.208540970635-0.0626870570802-0.1887513676720.149855253321-0.0253917915522-0.4741103147840.1471824703310.997676766910.2133150015630.1905831684030.0674931491201-0.04981737864310.434888824648-0.01820763488180.181590428452-3.1236742046777.6940287072182.552548308
391.91281023746-0.04712495563891.03010259473.5492933852-1.666793445351.67692611208-0.1560853613450.0855335149741-0.09652907872030.2100387080590.023693979491-0.2478468538790.4009308808560.5659789100930.1970360425570.3300789407170.1776116117120.006051992911740.3895221140220.01763660933710.14611109617-4.1028102408871.5231747467179.11888958
400.418243398887-0.309634500124-0.0248820731493.289778971740.6816641336280.505789306647-0.0496551568914-0.00695392403664-0.172550497940.2189336764710.0596910301141-0.1278996943680.6141489564820.4612526694710.06582612896190.4942171683740.2860371994410.02797259326320.3280755710840.03025010494330.214079804374-10.685398983260.0128761172181.372240597
410.301737673553-0.0977220804012-0.275219044912.341390737150.7710920360990.477073631436-0.03473819901450.2545243135520.0152251255863-0.02576517016370.0105851881292-0.2362156692180.4159391113690.3338247774670.0355095711440.3667723905580.1834871199310.02051717213860.354785492205-0.01216079989980.167394615849-14.015280299465.2073306643170.087058419
422.58296016646-0.264257805747-0.01403714887142.938614754890.9451149083150.748082826124-0.003492237203970.288127932695-0.0595804415283-0.138479077733-0.03647199823020.2539069644050.4877968304240.04696246772550.1120075280330.4325858054120.1015415055750.03049420958780.239835070193-0.007759773893130.12781391457-22.721373711264.1181582608167.202056703
433.768268478574.591709842895.27930245925.846523856346.591424730267.510288117050.09867294539240.4085323342710.0413306134345-0.40895348754-0.1856213071960.0934917891591-0.1213306866280.2602489637990.02047629277530.3437116891520.05389442544920.02249376686960.3894143796780.09964973726750.251154952834-17.119717424985.287440073149.878415539
442.15460049469-0.123583005862-0.6856020907241.94867814096-0.2112211737534.21285547154-0.136962404110.2932336022460.00139889208244-0.16070502269-0.09090298015660.392457586348-0.2471724266-0.3771082461180.1864797354870.1586710919240.0561927449367-0.1019456105660.307410388009-0.08268472811860.28282679022-39.394138164985.6493299068161.149620107
453.767253925090.08081722261850.3039543206144.25859282197-1.718166119553.255697895840.0077559211090.348727932911-0.0441065167019-0.253856295769-0.0275541259670.431352142723-0.130717903227-0.570794232125-0.04360883902620.1905695212140.0830161242834-0.04474755775550.335509622712-0.1102659290210.250077149292-42.972670296684.036661809162.921282272
462.08079598672-0.2881270791780.7070048530381.89881863972-0.6684456113682.359904382690.0314020878480.4265527428940.274803261451-0.160596535669-0.1889923837770.234062127211-0.182663719185-0.1569510621840.1763579710630.2821352344560.0717131852731-0.05795670330580.29426063658-0.01877343931970.217857640678-32.583390623389.7296611864157.056039677
474.618277846681.443229967831.967266902662.948470883570.4073697031194.075508366120.01816755462830.383864821289-0.132061995844-0.39512465142-0.1127926397790.3007300198760.102833263794-0.2605313390970.07081616552360.2288710570020.0903239631777-0.04244598545690.273483541687-0.05274688640940.165804767538-28.708125558678.7422707081153.287960465
484.851899084094.815500970913.727235025366.015690268062.7747167993.83763846572-0.06256551132460.533562580477-0.392964596538-0.2029189583750.0826541660591-0.2257872712680.04329685793510.428704937044-0.05230085973280.2106747231990.0724454117764-0.01870184987370.340150744631-0.01859167663410.176899779112-15.850575511877.6194083133158.945968912
495.40239641791-7.059374873584.923188322789.22760554803-6.435372846834.49045963521-0.0442570511027-0.415438792783-0.02331476213680.2427426614890.1986581623-0.00673256284681-0.0111913645096-0.316993465828-0.2187504141740.3964783535650.02550341577630.002009785848820.401453432802-0.001314565223840.228800399209-9.0269254932485.9284189787144.153180128
502.485739883630.230243161793-0.3206022899652.53188033513-0.3644587205133.751180958370.0564658239771-0.2825395873470.1601842323820.2161948316180.0487243581815-0.0611197541123-0.6173111674920.0139981897569-0.08674852250920.429395543093-0.0412637331375-0.08940945843980.2149432857-0.02483389632310.2375275631796.2982735768191.2225969201141.084606033
514.0048979065-0.247646526066-0.379905772783.84095848174-0.1247135057843.13908010848-0.1734411883320.0443976948977-0.00029485883046-0.240951452302-0.0264040433306-0.69109066568-0.5174320358670.5075098088790.1928155369890.466950952161-0.2321204919310.01121873627050.3564657589820.09292261426380.46091510377218.757198861893.3606544555125.058092481
522.55261071861-0.017777724229-0.5034690543273.049162448770.1927927793922.02612952863-0.183444622653-0.1249661486390.04954256969620.03798275182770.101846427224-0.44615463734-0.594357840140.4296776513190.02677904843840.376063938466-0.1746787498-0.03780276406320.30974114340.03108288047660.3618510759516.358861144491.7214072026131.449873626
532.531737543620.731686495816-0.1860137529082.287875157540.1056470193661.965177741-0.0536452037948-0.1565911255770.3218720543330.15922556030.0318274217435-0.188551710474-0.5975252219960.06196803040380.04966319077680.439853098677-0.0126251503885-0.056809524820.2035393509050.006201561316770.221136109674.7341602125594.2856754814137.140972115
545.779643857260.1350464972361.395775259713.86842044162-0.05892994339035.431346046570.0616759896542-0.285058953607-0.003645425082760.2378754560760.0778257238579-0.485624290066-0.1990835506920.289818988825-0.1038773760540.276808919726-0.01077074168230.01084761599680.182008448921-0.02451327106510.1504155509873.8557098019482.5391593501140.85230923
552.408565343670.2262357020823.570579280582.950740935550.3173017372595.313220257640.283171596669-0.379431363568-0.606707855190.17419417531-0.1193370570330.0393208722250.0949149609439-0.445414512264-0.1598044240370.342903213117-0.0448793734029-0.01138296281230.2485714848180.05758080875260.217817614417-7.4130001224177.6683983283135.360341095
568.214526950152.41868966661-5.618752851427.47123277718-2.405969389986.474729248620.101443817032-0.0774387031732-0.2944396053360.119972322467-0.03051088248420.12170202618-0.03699647468520.265201669662-0.0333348989180.07682275805070.0381537427323-0.04241387859870.3483810047890.02916842382350.2849118252859.5064581944858.6055355214123.068369791
570.7932052428-0.0692480818431-0.7378254733082.21270889734-0.5045604546151.382954420250.0198181626725-0.151505523602-0.56376407776-0.1524363277630.112545663814-0.01835298330970.161830036667-0.182415495508-0.07464292493750.123518031789-0.0349803073335-0.02513865696060.2525908339710.04166159647150.438548519895-6.2331370474659.4399090819117.71661093
584.7705205515-1.21779666243-1.192610135362.424883869470.996673058261.292977395640.11594774088-0.0298558540243-0.372148275883-0.332104452997-0.1357745783160.586652241841-0.198144425121-0.617826777347-0.0022285726130.2490997630110.108477762818-0.129323825420.5076744938970.04310209048060.37710777033-18.597232122374.0682216395110.64023286
594.16865047841-0.8875460407540.0773720017972.689691359940.1886285739182.880155614510.1564474318950.036594316499-0.48895067085-0.2244106469990.0122774622450.4141671568070.0208446315918-0.678762486028-0.07964826613330.159776741950.0413245547886-0.09580991018420.3932790900620.0719637144610.370490150337-16.653731740668.1132691732114.744838427
601.11274881410.586358149985-0.1129216336551.754067490190.03261993775642.556274982410.09469603946670.101841282391-0.559095955189-0.1864735530990.1103161627310.1890155134850.249687109389-0.424741450803-0.01215808742720.155887347239-0.017451735474-0.04039494242590.2749305520620.02395864512560.463892666951-6.6841619643259.0362883942112.419602129
611.3566905758-0.0649054626878-0.8313195829580.959099060441-0.3332042006743.55762772401-0.0972730391154-0.0988731809662-0.577303147786-0.08463789770730.0975205859880.2111248605840.10735905479-0.4434798918480.01478393422390.107987221718-0.000455703981805-0.03776859520390.2714480760910.1050252903610.42981731969-5.0382168916565.2773061595123.677283433
623.709255273870.785302330568-0.09331469769024.194768655640.1170650109142.45061751619-0.122707338989-0.2591336791180.07749675794720.005958335317530.03023352692050.289057864499-0.125874644711-0.09997885895580.05608237667250.0661304136201-0.0298577731917-0.03035876630310.2390766444840.0757675254130.2542571963720.41428857402964.6566194383125.352460265
633.79340928033.40712444396-3.280210746624.44754683398-1.44101603454.46913925107-0.0418729116893-0.284294625198-0.1391187889190.1093294282850.0771481392937-0.2433340792580.03287511192840.0606631810549-0.0168978881890.197166050821-0.0772851379011-0.05407872297640.2902963063130.07214462984280.256664699367.7668849947169.3582550262128.664703016
648.118373161731.481715739831.783750588653.03462016742.366103232654.635525089550.06225598337940.03348686358930.2816979778720.0105809198614-0.0662179093613-0.00226072966782-0.08999286473950.205170748073-0.08825712292850.1176743406790.02600875097690.02620711977940.329764562072-0.01974107896970.21359900152717.467402182954.0817427743126.602184143
651.80614521395-0.7779044791430.1849619962442.06120719219-0.008572975952561.00837826796-0.172345396243-0.1771843206890.0786073596050.1681537690720.167040630036-0.2790197451450.2099114504260.608358708562-0.004488630708920.1159786408210.112760281357-0.02929752440590.641191126792-0.101844433750.38773466161640.175588245445.1239529945131.323758325
660.775956272361-0.2775666204790.2493354665570.34206975107-0.03971897314280.147394462385-0.131696044227-0.1805692343740.1319659402060.1347500728540.215913886368-0.1983236971680.03763616656120.3754168752820.1147147208590.01147040031360.201336185461-0.1134283680140.910497502005-0.1525665846410.4119470089243.635743684944.2982562316133.771156618
673.08297977839-0.244868553922-0.08214865375431.95661823694-0.9270225432610.6877136687630.0584551738664-0.273895855010.3647480950280.289215378926-0.0346319543239-0.529597626939-0.2465780452830.4577528953450.1274215779550.122883778296-0.136949194516-0.03064188485940.713969215184-0.1039730236460.46683427252543.990585917157.0038151924125.817486865
681.45176795048-0.325690043481-0.01276981505380.630634836841-0.1696314298210.898704460643-0.02499151876520.00854375760953-0.1490790015050.1435245556320.0715123891832-0.07451022817250.1906503274390.498803074986-0.01417478929050.1170647578470.0342065825202-0.01482731512270.406525122511-0.08974768134950.27293063333829.812414848643.9074494031125.841184656
695.475102020774.15549346790.6753848840168.249091993010.8287158155142.85833409971-0.155478229828-0.1935507264090.2283276072360.008523455272740.23549351575-0.527127641378-0.5093090848150.854383845843-0.06451002751060.232405311885-0.0235990560549-0.01335023396750.499907006895-0.1379775079630.30005263302834.461065862958.1706302491135.470266516
704.227443861491.02096653702-0.3228155316235.05186641299-0.5638461953171.51623405884-0.0430041719985-0.281344571558-0.01213801067390.4862180767130.0907883001827-0.1424243258690.00971554827510.300949154244-0.06196636746770.1148381024260.03357693087340.01976283583890.312729181177-0.08260206154160.19970112705124.404212743650.7501756691134.247923653
718.639441791435.333406693211.926783288296.568078393122.149660482644.32716230524-0.254931873563-0.6132533759370.3335430113720.1104155707790.05322020081660.3644810773960.01071677269220.006107784238180.1432125079410.1422813521670.03180323815470.06511975472890.228848444567-0.03276207300950.22607396136715.831237424747.5615150876136.437688051
727.95791351377-1.8916935682-0.09611271785966.209882373332.743650239737.86587475345-0.319808605818-1.005216758930.07321188419881.081430826670.2445095455360.04049411439950.2426895418530.2798822085970.03105328677590.634570941370.2488451648060.00125203283820.749303571975-0.02178288734490.33423992373924.151525301543.6689909693162.431264815
731.133942901540.174594692280.2074416508611.66439159422-0.3981834245392.00503990015-0.32713591678-0.286913423362-0.7122787072710.4692578905420.2353987938820.4069287134560.938852025233-0.310548502264-0.03058342914350.7005120215960.03205533797880.2457320611560.3513747222650.1237530020770.6573295883395.2890832998529.7420216966150.067198829
741.10150914428-0.2991153728850.6046550138171.019893062850.2071465123990.698662928155-0.185850048681-0.477605078732-0.697034072380.5789212472770.2172280013310.1989774209480.7529092039950.196171575934-0.04380908808380.7586417658760.3062875278670.1548156430950.4520365939480.1247638474130.49394877213616.064146227631.5579859928154.273673986
750.7378489595960.7442966486870.6135361352760.8246963595480.4283859735261.03827625407-0.31452235668-0.44853441517-0.2526451113740.4210770030360.07525583653760.2932813150040.37558883106-0.0473717818950.229981188020.4092305139470.2645855264340.2152340880210.4185128478680.06892561549470.3128833039938.3800193804643.7057403621155.881110327
765.079880797380.499729387489-0.03535787222711.84526134621-0.05894335570662.00738760216-0.072788851342-0.108606094624-0.1569276312950.358859252080.177336599552-0.05505920398270.08727594009860.503792674854-0.09866360983350.4908724053670.2573625416140.03318107032660.455585195676-0.005893364413640.25993465832822.552991270744.9550247974152.070740375
775.6451489108-3.21129827347-1.889554616647.46578554453-0.8073889404115.049038584120.09127986586640.0346378948948-0.403021589904-0.26279046852-0.07309436320560.3348890121220.520297757308-0.3314463256590.0719401962830.125422399988-0.0936856527288-0.09157369050940.20422994177-0.01210616039980.2318394544576.1620241793132.781884289794.9584383774
782.56533040338-0.0671446207459-0.3343318440393.13926856394-0.2895781919522.29460878564-0.0371889361712-0.0601016479565-0.2700892225950.06694693208050.201254304841-0.0621541372710.3012644662140.346560261835-0.1178772689010.1348156940660.0776153248479-0.03021897980210.219698479723-0.0002859442329190.19677238578922.390162480435.862161879197.7612063492
793.364538327660.377265687372-0.1065640204731.97498061846-0.6604739008151.23265410883-0.08147179064730.3207750256140.261691848756-0.0582045740290.0766984839151-0.496199384125-0.2313314150620.726290644032-0.0446708413840.218833662781-0.1512986835-0.07331801154810.510948506423-0.1330535017690.42103868457135.058147269751.655495579196.1075658489
804.456188942540.339992857663-1.633522481072.45601299392-0.4103587726142.96476572473-0.07466464660750.487425419120.233895537847-0.4262903572130.130601004993-0.449191230031-0.2716700131180.654533738738-0.1372164433510.200475605227-0.1019218270710.03160276617570.490309801575-0.0003166455682160.28445820175731.459540446748.568993794387.3981120624
811.31017240821-0.0052967013074-0.05359926730490.322129226495-0.2535573330790.998576438393-0.0407797152175-0.09670317459020.02132892396140.05417014897960.0503467661125-0.242937299170.04892294574970.4873584177070.03457887265060.06422902470610.044117205781-0.03224248912480.523131608778-0.1370873626260.31820922821433.744881565241.5593720925103.570404925
822.29664577980.06101447611240.2920247909571.04418658303-0.3250607570841.196761220290.010156648805-0.08542406675740.003427278350.02014031176990.131139183095-0.2319496072650.2411434640060.445735283188-0.08405967615840.1664451158560.0572948070639-0.03304436834380.260839433596-0.07653983197060.2025031487423.489578369337.7368865898102.550041771
832.759040600310.4664558327340.04942386634691.183370286180.04767721013681.1946664431-0.1051468172550.1648018222350.401545630987-0.1689771262550.0980314168116-0.0454678576925-0.1783951704580.113895858852-0.01558189115930.197750241664-0.0281153164059-0.02758295453820.124022120722-0.01028660172570.18887275136711.648838639150.434715898890.374727655
847.63606684096-2.86218205103-0.8452757425885.620272417770.9014553295362.73257481705-0.0191899325415-0.213398329442-0.5574005323820.166369396470.194894064033-0.7134426926140.5699187158850.614815888533-0.1458330185210.3364479147920.0689189992189-0.05874831282340.315142360808-0.0009700655142590.21144857666125.563131430831.229429802189.7482058109
854.46301072834-0.451011012951-0.9609824107723.614696021780.4534308952822.510489013980.1212317764250.1772048521340.0216154857376-0.1625915068460.058242324258-0.2075397301670.2838524879040.0662683699621-0.1032859042070.2152502798210.0219353330369-0.04191913648140.130275150849-0.0281348113860.074125257744815.046599184136.997946467989.2291760296
Refinement TLS group
IDRefine-IDRefine TLS-IDSelection details
1X-RAY DIFFRACTION1chain 'G' and (resid 245 through 266 )
2X-RAY DIFFRACTION2chain 'H' and (resid 21 through 38 )
3X-RAY DIFFRACTION3chain 'H' and (resid 39 through 60 )
4X-RAY DIFFRACTION4chain 'H' and (resid 61 through 100 )
5X-RAY DIFFRACTION5chain 'H' and (resid 101 through 179 )
6X-RAY DIFFRACTION6chain 'H' and (resid 180 through 213 )
7X-RAY DIFFRACTION7chain 'H' and (resid 214 through 266 )
8X-RAY DIFFRACTION8chain 'I' and (resid 21 through 38 )
9X-RAY DIFFRACTION9chain 'I' and (resid 39 through 80 )
10X-RAY DIFFRACTION10chain 'I' and (resid 81 through 122 )
11X-RAY DIFFRACTION11chain 'I' and (resid 123 through 244 )
12X-RAY DIFFRACTION12chain 'I' and (resid 245 through 266 )
13X-RAY DIFFRACTION13chain 'J' and (resid 21 through 38 )
14X-RAY DIFFRACTION14chain 'J' and (resid 39 through 60 )
15X-RAY DIFFRACTION15chain 'J' and (resid 61 through 100 )
16X-RAY DIFFRACTION16chain 'J' and (resid 101 through 164 )
17X-RAY DIFFRACTION17chain 'J' and (resid 165 through 191 )
18X-RAY DIFFRACTION18chain 'J' and (resid 192 through 213 )
19X-RAY DIFFRACTION19chain 'J' and (resid 214 through 244 )
20X-RAY DIFFRACTION20chain 'J' and (resid 245 through 266 )
21X-RAY DIFFRACTION21chain 'K' and (resid 21 through 38 )
22X-RAY DIFFRACTION22chain 'K' and (resid 39 through 60 )
23X-RAY DIFFRACTION23chain 'K' and (resid 61 through 80 )
24X-RAY DIFFRACTION24chain 'K' and (resid 81 through 100 )
25X-RAY DIFFRACTION25chain 'K' and (resid 101 through 171 )
26X-RAY DIFFRACTION26chain 'K' and (resid 172 through 201 )
27X-RAY DIFFRACTION27chain 'K' and (resid 202 through 244 )
28X-RAY DIFFRACTION28chain 'K' and (resid 245 through 266 )
29X-RAY DIFFRACTION29chain 'L' and (resid 21 through 38 )
30X-RAY DIFFRACTION30chain 'L' and (resid 39 through 60 )
31X-RAY DIFFRACTION31chain 'L' and (resid 61 through 80 )
32X-RAY DIFFRACTION32chain 'L' and (resid 81 through 100 )
33X-RAY DIFFRACTION33chain 'L' and (resid 101 through 152 )
34X-RAY DIFFRACTION34chain 'L' and (resid 153 through 244 )
35X-RAY DIFFRACTION35chain 'L' and (resid 245 through 266 )
36X-RAY DIFFRACTION36chain 'A' and (resid 21 through 38 )
37X-RAY DIFFRACTION37chain 'A' and (resid 39 through 60 )
38X-RAY DIFFRACTION38chain 'A' and (resid 61 through 80 )
39X-RAY DIFFRACTION39chain 'A' and (resid 81 through 122 )
40X-RAY DIFFRACTION40chain 'A' and (resid 123 through 179 )
41X-RAY DIFFRACTION41chain 'A' and (resid 180 through 213 )
42X-RAY DIFFRACTION42chain 'A' and (resid 214 through 266 )
43X-RAY DIFFRACTION43chain 'B' and (resid 21 through 38 )
44X-RAY DIFFRACTION44chain 'B' and (resid 39 through 80 )
45X-RAY DIFFRACTION45chain 'B' and (resid 81 through 122 )
46X-RAY DIFFRACTION46chain 'B' and (resid 123 through 191 )
47X-RAY DIFFRACTION47chain 'B' and (resid 192 through 244 )
48X-RAY DIFFRACTION48chain 'B' and (resid 245 through 266 )
49X-RAY DIFFRACTION49chain 'C' and (resid 21 through 38 )
50X-RAY DIFFRACTION50chain 'C' and (resid 39 through 60 )
51X-RAY DIFFRACTION51chain 'C' and (resid 61 through 80 )
52X-RAY DIFFRACTION52chain 'C' and (resid 81 through 122 )
53X-RAY DIFFRACTION53chain 'C' and (resid 123 through 191 )
54X-RAY DIFFRACTION54chain 'C' and (resid 192 through 244 )
55X-RAY DIFFRACTION55chain 'C' and (resid 245 through 266 )
56X-RAY DIFFRACTION56chain 'D' and (resid 21 through 38 )
57X-RAY DIFFRACTION57chain 'D' and (resid 39 through 60 )
58X-RAY DIFFRACTION58chain 'D' and (resid 61 through 80 )
59X-RAY DIFFRACTION59chain 'D' and (resid 81 through 122 )
60X-RAY DIFFRACTION60chain 'D' and (resid 123 through 179 )
61X-RAY DIFFRACTION61chain 'D' and (resid 180 through 213 )
62X-RAY DIFFRACTION62chain 'D' and (resid 214 through 244 )
63X-RAY DIFFRACTION63chain 'D' and (resid 245 through 266 )
64X-RAY DIFFRACTION64chain 'E' and (resid 21 through 38 )
65X-RAY DIFFRACTION65chain 'E' and (resid 39 through 80 )
66X-RAY DIFFRACTION66chain 'E' and (resid 81 through 122 )
67X-RAY DIFFRACTION67chain 'E' and (resid 123 through 142 )
68X-RAY DIFFRACTION68chain 'E' and (resid 143 through 191 )
69X-RAY DIFFRACTION69chain 'E' and (resid 192 through 213 )
70X-RAY DIFFRACTION70chain 'E' and (resid 214 through 244 )
71X-RAY DIFFRACTION71chain 'E' and (resid 245 through 266 )
72X-RAY DIFFRACTION72chain 'F' and (resid 21 through 38 )
73X-RAY DIFFRACTION73chain 'F' and (resid 39 through 137 )
74X-RAY DIFFRACTION74chain 'F' and (resid 138 through 201 )
75X-RAY DIFFRACTION75chain 'F' and (resid 202 through 224 )
76X-RAY DIFFRACTION76chain 'F' and (resid 225 through 266 )
77X-RAY DIFFRACTION77chain 'G' and (resid 21 through 38 )
78X-RAY DIFFRACTION78chain 'G' and (resid 39 through 60 )
79X-RAY DIFFRACTION79chain 'G' and (resid 61 through 80 )
80X-RAY DIFFRACTION80chain 'G' and (resid 81 through 100 )
81X-RAY DIFFRACTION81chain 'G' and (resid 101 through 122 )
82X-RAY DIFFRACTION82chain 'G' and (resid 123 through 179 )
83X-RAY DIFFRACTION83chain 'G' and (resid 180 through 191 )
84X-RAY DIFFRACTION84chain 'G' and (resid 192 through 213 )
85X-RAY DIFFRACTION85chain 'G' and (resid 214 through 244 )

+
About Yorodumi

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi

Thousand views of thousand structures

  • Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
  • This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
  • The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi

Read more