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Yorodumi- PDB-7dk2: Crystal structure of SARS-CoV-2 Spike RBD in complex with MW07 Fab -
+Open data
-Basic information
Entry | Database: PDB / ID: 7dk2 | ||||||
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Title | Crystal structure of SARS-CoV-2 Spike RBD in complex with MW07 Fab | ||||||
Components |
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Keywords | IMMUNE SYSTEM/VIRAL PROTEIN / SARS-CoV-2 / Spike / RBD / Antibody / ADE / VIRUS / IMMUNE SYSTEM-VIRAL PROTEIN complex | ||||||
Function / homology | Function and homology information Maturation of spike protein / viral translation / Translation of Structural Proteins / Virion Assembly and Release / host cell surface / host extracellular space / suppression by virus of host tetherin activity / Induction of Cell-Cell Fusion / structural constituent of virion / entry receptor-mediated virion attachment to host cell ...Maturation of spike protein / viral translation / Translation of Structural Proteins / Virion Assembly and Release / host cell surface / host extracellular space / suppression by virus of host tetherin activity / Induction of Cell-Cell Fusion / structural constituent of virion / entry receptor-mediated virion attachment to host cell / host cell endoplasmic reticulum-Golgi intermediate compartment membrane / receptor-mediated endocytosis of virus by host cell / Attachment and Entry / membrane fusion / symbiont-mediated suppression of host innate immune response / positive regulation of viral entry into host cell / receptor-mediated virion attachment to host cell / receptor ligand activity / host cell surface receptor binding / fusion of virus membrane with host plasma membrane / fusion of virus membrane with host endosome membrane / viral envelope / virion attachment to host cell / SARS-CoV-2 activates/modulates innate and adaptive immune responses / host cell plasma membrane / virion membrane / identical protein binding / membrane / plasma membrane Similarity search - Function | ||||||
Biological species | Homo sapiens (human) Severe acute respiratory syndrome coronavirus 2 | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3 Å | ||||||
Authors | Wang, J. / Jiao, S. / Wang, R. / Zhang, J. / Zhang, M. / Wang, M. / Chen, S. | ||||||
Citation | Journal: To Be Published Title: Architectural versatility of spike neutralization by a SARS-CoV-2 antibody Authors: Sun, Y. / Liu, F.J. / Guo, H.T. / Wang, J. / Wang, R. / Zhang, M. / Wang, M. / Chen, S. #1: Journal: To Be Published Title: Antibody-dependent enhancement (ADE) of SARS-CoV-2 infection requires FcgammaRIIB-mediated uptake of virus-antibody complex with bivalent interaction Authors: Wang, J. / Jiao, S. / Wang, R. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 7dk2.cif.gz | 483.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb7dk2.ent.gz | 395.6 KB | Display | PDB format |
PDBx/mmJSON format | 7dk2.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/dk/7dk2 ftp://data.pdbj.org/pub/pdb/validation_reports/dk/7dk2 | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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