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Yorodumi- PDB-7dct: Crystal structure of HSF1 DNA-binding domain in complex with 3-si... -
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-Basic information
Entry | Database: PDB / ID: 7dct | ||||||
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Title | Crystal structure of HSF1 DNA-binding domain in complex with 3-site HSE DNA (24 bp) | ||||||
Components |
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Keywords | DNA BINDING PROTEIN/DNA / DNA BINDING PROTEIN-DNA COMPLEX | ||||||
Function / homology | Function and homology information cellular response to nitroglycerin / response to hypobaric hypoxia / sequence-specific single stranded DNA binding / cellular response to diamide / cellular response to L-glutamine / negative regulation of double-strand break repair via nonhomologous end joining / positive regulation of stress granule assembly / response to peptide / positive regulation of apoptotic DNA fragmentation / negative regulation of inclusion body assembly ...cellular response to nitroglycerin / response to hypobaric hypoxia / sequence-specific single stranded DNA binding / cellular response to diamide / cellular response to L-glutamine / negative regulation of double-strand break repair via nonhomologous end joining / positive regulation of stress granule assembly / response to peptide / positive regulation of apoptotic DNA fragmentation / negative regulation of inclusion body assembly / positive regulation of inclusion body assembly / cellular response to sodium arsenite / translation elongation factor binding / nuclear stress granule / positive regulation of macrophage differentiation / cellular response to potassium ion / cellular response to angiotensin / protein folding chaperone complex / negative regulation of cardiac muscle cell apoptotic process / RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding / STAT family protein binding / response to psychosocial stress / mitotic spindle pole / response to testosterone / general transcription initiation factor binding / HSF1-dependent transactivation / cellular response to unfolded protein / HSF1 activation / Regulation of HSF1-mediated heat shock response / Attenuation phase / mRNA transport / negative regulation of protein-containing complex assembly / heterochromatin / regulation of cellular response to heat / positive regulation of tyrosine phosphorylation of STAT protein / heat shock protein binding / cellular response to copper ion / cellular response to cadmium ion / positive regulation of mitotic cell cycle / response to nutrient / response to activity / cellular response to estradiol stimulus / promoter-specific chromatin binding / positive regulation of DNA-binding transcription factor activity / Hsp90 protein binding / euchromatin / cellular response to gamma radiation / PML body / chromatin DNA binding / kinetochore / DNA-binding transcription repressor activity, RNA polymerase II-specific / defense response / cellular response to hydrogen peroxide / Aggrephagy / mRNA processing / sequence-specific double-stranded DNA binding / MAPK cascade / cellular response to xenobiotic stimulus / positive regulation of cold-induced thermogenesis / cellular response to heat / cellular response to lipopolysaccharide / protein-containing complex assembly / DNA-binding transcription activator activity, RNA polymerase II-specific / sequence-specific DNA binding / transcription cis-regulatory region binding / DNA-binding transcription factor activity, RNA polymerase II-specific / protein heterodimerization activity / ribonucleoprotein complex / DNA-binding transcription factor activity / RNA polymerase II cis-regulatory region sequence-specific DNA binding / negative regulation of gene expression / DNA repair / centrosome / positive regulation of gene expression / chromatin / regulation of transcription by RNA polymerase II / protein kinase binding / perinuclear region of cytoplasm / negative regulation of transcription by RNA polymerase II / positive regulation of transcription by RNA polymerase II / DNA binding / nucleoplasm / identical protein binding / nucleus / cytosol / cytoplasm Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.36 Å | ||||||
Authors | Feng, N. / Liu, W. | ||||||
Citation | Journal: Iscience / Year: 2021 Title: Structures of heat shock factor trimers bound to DNA. Authors: Feng, N. / Feng, H. / Wang, S. / Punekar, A.S. / Ladenstein, R. / Wang, D.C. / Zhang, Q. / Ding, J. / Liu, W. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 7dct.cif.gz | 369.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb7dct.ent.gz | 296.8 KB | Display | PDB format |
PDBx/mmJSON format | 7dct.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 7dct_validation.pdf.gz | 492 KB | Display | wwPDB validaton report |
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Full document | 7dct_full_validation.pdf.gz | 498.7 KB | Display | |
Data in XML | 7dct_validation.xml.gz | 25 KB | Display | |
Data in CIF | 7dct_validation.cif.gz | 36.4 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/dc/7dct ftp://data.pdbj.org/pub/pdb/validation_reports/dc/7dct | HTTPS FTP |
-Related structure data
Related structure data | 7dcjC 7dcsC 7dcuC 5hdgS S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
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-Assembly
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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