+Open data
-Basic information
Entry | Database: PDB / ID: 7brt | ||||||||||||
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Title | Crystal structure of Sec62 LIR fused to GABARAP | ||||||||||||
Components | Translocation protein SEC62,Gamma-aminobutyric acid receptor-associated protein | ||||||||||||
Keywords | MEMBRANE PROTEIN / autophagy / endoplasmic reticulum | ||||||||||||
Function / homology | Function and homology information : / positive regulation of protein K48-linked ubiquitination / cotranslational protein targeting to membrane / regulation of Rac protein signal transduction / GABA receptor binding / post-translational protein targeting to endoplasmic reticulum membrane / cellular response to nitrogen starvation / phosphatidylethanolamine binding / post-translational protein targeting to membrane, translocation / TBC/RABGAPs ...: / positive regulation of protein K48-linked ubiquitination / cotranslational protein targeting to membrane / regulation of Rac protein signal transduction / GABA receptor binding / post-translational protein targeting to endoplasmic reticulum membrane / cellular response to nitrogen starvation / phosphatidylethanolamine binding / post-translational protein targeting to membrane, translocation / TBC/RABGAPs / microtubule associated complex / Macroautophagy / beta-tubulin binding / axoneme / autophagosome membrane / autophagosome maturation / autophagosome assembly / extrinsic apoptotic signaling pathway via death domain receptors / smooth endoplasmic reticulum / autophagosome / protein targeting / rough endoplasmic reticulum / sperm midpiece / microtubule cytoskeleton organization / positive regulation of proteasomal ubiquitin-dependent protein catabolic process / protein transport / actin cytoskeleton / signaling receptor activity / cytoplasmic vesicle / microtubule binding / chemical synaptic transmission / microtubule / membrane => GO:0016020 / lysosome / Golgi membrane / ubiquitin protein ligase binding / synapse / endoplasmic reticulum / membrane / plasma membrane / cytosol Similarity search - Function | ||||||||||||
Biological species | Homo sapiens (human) | ||||||||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.999 Å | ||||||||||||
Authors | Yamasaki, A. / Noda, N.N. | ||||||||||||
Funding support | Japan, 3items
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Citation | Journal: Nat Commun / Year: 2020 Title: Super-assembly of ER-phagy receptor Atg40 induces local ER remodeling at contacts with forming autophagosomal membranes. Authors: Mochida, K. / Yamasaki, A. / Matoba, K. / Kirisako, H. / Noda, N.N. / Nakatogawa, H. | ||||||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 7brt.cif.gz | 131 KB | Display | PDBx/mmCIF format |
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PDB format | pdb7brt.ent.gz | 101.5 KB | Display | PDB format |
PDBx/mmJSON format | 7brt.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 7brt_validation.pdf.gz | 427.4 KB | Display | wwPDB validaton report |
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Full document | 7brt_full_validation.pdf.gz | 430.5 KB | Display | |
Data in XML | 7brt_validation.xml.gz | 15.1 KB | Display | |
Data in CIF | 7brt_validation.cif.gz | 22 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/br/7brt ftp://data.pdbj.org/pub/pdb/validation_reports/br/7brt | HTTPS FTP |
-Related structure data
Related structure data | 7brnC 7brqC 7bruC 1gnuS C: citing same article (ref.) S: Starting model for refinement |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: 1
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