[日本語] English
万見
- PDB-7aqs: Crystal structure of E. coli DPS in space group P1 -

+
データを開く


IDまたはキーワード:

読み込み中...

-
基本情報

登録情報
データベース: PDB / ID: 7aqs
タイトルCrystal structure of E. coli DPS in space group P1
要素DNA protection during starvation protein
キーワードDNA BINDING PROTEIN / DNA protection during starvation protein / an impurity of Colicin preparation / Iron
機能・相同性
機能・相同性情報


DnaA-Dps complex / 酸化還元酵素; 金属イオンを酸化する / oxidoreductase activity, acting on metal ions / nucleoid / chromosome condensation / response to stress / response to starvation / negative regulation of DNA-templated DNA replication initiation / ferric iron binding / intracellular iron ion homeostasis ...DnaA-Dps complex / 酸化還元酵素; 金属イオンを酸化する / oxidoreductase activity, acting on metal ions / nucleoid / chromosome condensation / response to stress / response to starvation / negative regulation of DNA-templated DNA replication initiation / ferric iron binding / intracellular iron ion homeostasis / DNA binding / identical protein binding / membrane / cytoplasm
類似検索 - 分子機能
DNA protection during starvation protein, gammaproteobacteria / Dps protein family signature 2. / Dps protein family signature 1. / DNA-binding protein Dps, conserved site / DNA-binding protein Dps / Ferritin/DPS protein domain / Ferritin-like domain / Ferritin-like / Ferritin-like superfamily
類似検索 - ドメイン・相同性
: / DNA protection during starvation protein
類似検索 - 構成要素
生物種Escherichia coli (大腸菌)
手法X線回折 / シンクロトロン / 分子置換 / 解像度: 2.8 Å
データ登録者Jakob, R.P. / Pipercevic, J. / Righetto, R. / Goldie, K. / Stahlberg, H. / Maier, T. / Hiller, S.
引用ジャーナル: Biochim Biophys Acta Biomembr / 年: 2021
タイトル: Identification of a Dps contamination in Mitomycin-C-induced expression of Colicin Ia.
著者: Pipercevic, J. / Jakob, R.P. / Righetto, R.D. / Goldie, K.N. / Stahlberg, H. / Maier, T. / Hiller, S.
履歴
登録2020年10月22日登録サイト: PDBE / 処理サイト: PDBE
改定 1.02021年9月1日Provider: repository / タイプ: Initial release
改定 1.12024年1月31日Group: Data collection / Refinement description
カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / pdbx_initial_refinement_model / struct_ncs_dom_lim
Item: _struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id ..._struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id / _struct_ncs_dom_lim.beg_label_comp_id / _struct_ncs_dom_lim.beg_label_seq_id / _struct_ncs_dom_lim.end_auth_comp_id / _struct_ncs_dom_lim.end_label_asym_id / _struct_ncs_dom_lim.end_label_comp_id / _struct_ncs_dom_lim.end_label_seq_id
改定 1.22024年10月16日Group: Structure summary
カテゴリ: pdbx_entry_details / pdbx_modification_feature
Item: _pdbx_entry_details.has_protein_modification

-
構造の表示

構造ビューア分子:
MolmilJmol/JSmol

ダウンロードとリンク

-
集合体

登録構造単位
A: DNA protection during starvation protein
B: DNA protection during starvation protein
C: DNA protection during starvation protein
D: DNA protection during starvation protein
E: DNA protection during starvation protein
F: DNA protection during starvation protein
G: DNA protection during starvation protein
H: DNA protection during starvation protein
I: DNA protection during starvation protein
J: DNA protection during starvation protein
K: DNA protection during starvation protein
L: DNA protection during starvation protein
M: DNA protection during starvation protein
N: DNA protection during starvation protein
O: DNA protection during starvation protein
P: DNA protection during starvation protein
Q: DNA protection during starvation protein
R: DNA protection during starvation protein
S: DNA protection during starvation protein
T: DNA protection during starvation protein
U: DNA protection during starvation protein
V: DNA protection during starvation protein
W: DNA protection during starvation protein
X: DNA protection during starvation protein
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)455,12948
ポリマ－453,78924
非ポリマー1,34024
水8,683482
1
A: DNA protection during starvation protein
B: DNA protection during starvation protein
C: DNA protection during starvation protein
D: DNA protection during starvation protein
E: DNA protection during starvation protein
F: DNA protection during starvation protein
G: DNA protection during starvation protein
H: DNA protection during starvation protein
I: DNA protection during starvation protein
J: DNA protection during starvation protein
K: DNA protection during starvation protein
L: DNA protection during starvation protein
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)227,56524
ポリマ－226,89512
非ポリマー67012
水21612
タイプ名称対称操作数
identity operation1_555x,y,z1
Buried area46490 Å2
ΔGint-301 kcal/mol
Surface area58470 Å2
手法PISA
2
M: DNA protection during starvation protein
N: DNA protection during starvation protein
O: DNA protection during starvation protein
P: DNA protection during starvation protein
Q: DNA protection during starvation protein
R: DNA protection during starvation protein
S: DNA protection during starvation protein
T: DNA protection during starvation protein
U: DNA protection during starvation protein
V: DNA protection during starvation protein
W: DNA protection during starvation protein
X: DNA protection during starvation protein
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)227,56524
ポリマ－226,89512
非ポリマー67012
水21612
タイプ名称対称操作数
identity operation1_555x,y,z1
Buried area46660 Å2
ΔGint-303 kcal/mol
Surface area58170 Å2
手法PISA
単位格子
Length a, b, c (Å)91.550, 91.810, 172.640
Angle α, β, γ (deg.)91.170, 100.520, 119.920
Int Tables number1
Space group name H-MP1
非結晶学的対称性 (NCS)NCSドメイン:
IDEns-ID詳細
11(chain A and (resid 13 through 167 or resid 201))
21(chain B and (resid 13 through 167 or resid 201))
31(chain C and (resid 13 through 167 or resid 201))
41(chain D and (resid 13 through 167 or resid 201))
51(chain E and (resid 13 through 167 or resid 201))
61chain F
71(chain G and (resid 13 through 167 or resid 201))
81(chain H and (resid 13 through 167 or resid 201))
91(chain I and (resid 13 through 167 or resid 201))
101chain J
111(chain K and (resid 13 through 167 or resid 201))
121(chain L and (resid 13 through 167 or resid 201))
131(chain M and (resid 13 through 167 or resid 201))
141chain N
151(chain O and (resid 13 through 167 or resid 201))
161(chain P and (resid 13 through 167 or resid 201))
171(chain Q and (resid 13 through 167 or resid 201))
181chain R
191(chain S and (resid 13 through 167 or resid 201))
201(chain T and (resid 13 through 167 or resid 201))
211(chain U and (resid 13 through 167 or resid 201))
221(chain V and (resid 13 through 167 or resid 201))
231(chain W and (resid 13 through 167 or resid 201))
241(chain X and (resid 13 through 167 or resid 201))

NCSドメイン領域:

Ens-ID: 1

Dom-IDComponent-IDBeg auth comp-IDBeg label comp-IDEnd auth comp-IDEnd label comp-IDSelection detailsAuth asym-IDLabel asym-IDAuth seq-IDLabel seq-ID
11ASNASNGLUGLU(chain A and (resid 13 through 167 or resid 201))AA13 - 16713 - 167
12FEFEFEFE(chain A and (resid 13 through 167 or resid 201))AY201
21ASNASNGLUGLU(chain B and (resid 13 through 167 or resid 201))BB13 - 16713 - 167
22FEFEFEFE(chain B and (resid 13 through 167 or resid 201))BZ201
31ASNASNGLUGLU(chain C and (resid 13 through 167 or resid 201))CC13 - 16713 - 167
32FEFEFEFE(chain C and (resid 13 through 167 or resid 201))CAA201
41ASNASNGLUGLU(chain D and (resid 13 through 167 or resid 201))DD13 - 16713 - 167
42FEFEFEFE(chain D and (resid 13 through 167 or resid 201))DBA201
51ASNASNGLUGLU(chain E and (resid 13 through 167 or resid 201))EE13 - 16713 - 167
52FEFEFEFE(chain E and (resid 13 through 167 or resid 201))ECA201
61ASNASNGLUGLUchain FFF13 - 16713 - 167
71ASNASNGLUGLU(chain G and (resid 13 through 167 or resid 201))GG13 - 16713 - 167
72FEFEFEFE(chain G and (resid 13 through 167 or resid 201))GEA201
81ASNASNGLUGLU(chain H and (resid 13 through 167 or resid 201))HH13 - 16713 - 167
82FEFEFEFE(chain H and (resid 13 through 167 or resid 201))HFA201
91ASNASNGLUGLU(chain I and (resid 13 through 167 or resid 201))II13 - 16713 - 167
92FEFEFEFE(chain I and (resid 13 through 167 or resid 201))IGA201
101ASNASNGLUGLUchain JJJ13 - 16713 - 167
111ASNASNGLUGLU(chain K and (resid 13 through 167 or resid 201))KK13 - 16713 - 167
112FEFEFEFE(chain K and (resid 13 through 167 or resid 201))KIA201
121ASNASNGLUGLU(chain L and (resid 13 through 167 or resid 201))LL13 - 16713 - 167
122FEFEFEFE(chain L and (resid 13 through 167 or resid 201))LJA201
131ASNASNGLUGLU(chain M and (resid 13 through 167 or resid 201))MM13 - 16713 - 167
132FEFEFEFE(chain M and (resid 13 through 167 or resid 201))MKA201
141ASNASNGLUGLUchain NNN13 - 16713 - 167
151ASNASNGLUGLU(chain O and (resid 13 through 167 or resid 201))OO13 - 16713 - 167
152FEFEFEFE(chain O and (resid 13 through 167 or resid 201))OMA201
161ASNASNGLUGLU(chain P and (resid 13 through 167 or resid 201))PP13 - 16713 - 167
162FEFEFEFE(chain P and (resid 13 through 167 or resid 201))PNA201
171ASNASNGLUGLU(chain Q and (resid 13 through 167 or resid 201))QQ13 - 16713 - 167
172FEFEFEFE(chain Q and (resid 13 through 167 or resid 201))QOA201
181ASNASNGLUGLUchain RRR13 - 16713 - 167
191ASNASNGLUGLU(chain S and (resid 13 through 167 or resid 201))SS13 - 16713 - 167
192FEFEFEFE(chain S and (resid 13 through 167 or resid 201))SQA201
201ASNASNGLUGLU(chain T and (resid 13 through 167 or resid 201))TT13 - 16713 - 167
202FEFEFEFE(chain T and (resid 13 through 167 or resid 201))TRA201
211ASNASNGLUGLU(chain U and (resid 13 through 167 or resid 201))UU13 - 16713 - 167
212FEFEFEFE(chain U and (resid 13 through 167 or resid 201))USA201
221ASNASNGLUGLU(chain V and (resid 13 through 167 or resid 201))VV13 - 16713 - 167
222FEFEFEFE(chain V and (resid 13 through 167 or resid 201))VTA201
231ASNASNGLUGLU(chain W and (resid 13 through 167 or resid 201))WW13 - 16713 - 167
232FEFEFEFE(chain W and (resid 13 through 167 or resid 201))WUA201
241ASNASNGLUGLU(chain X and (resid 13 through 167 or resid 201))XX13 - 16713 - 167
242FEFEFEFE(chain X and (resid 13 through 167 or resid 201))XVA201

-
要素

#1: タンパク質 ...
DNA protection during starvation protein


分子量: 18907.875 Da / 分子数: 24 / 由来タイプ: 天然 / 由来: (天然) Escherichia coli (strain K12) (大腸菌) / Variant: TG1 / 株: K12
参照: UniProt: P0ABT2, 酸化還元酵素; 金属イオンを酸化する
#2: 化合物...
ChemComp-FE / FE (III) ION


分子量: 55.845 Da / 分子数: 24 / 由来タイプ: 合成 / 式: Fe
#3: 水 ChemComp-HOH / water


分子量: 18.015 Da / 分子数: 482 / 由来タイプ: 天然 / 式: H2O
研究の焦点であるリガンドがあるかN
Has protein modificationY

-
実験情報

-
実験

実験手法: X線回折 / 使用した結晶の数: 1

-
試料調製

結晶マシュー密度: 2.8 Å3/Da / 溶媒含有率: 56.01 %
結晶化温度: 293 K / 手法: 蒸気拡散法, シッティングドロップ法
詳細: 0.1 M HEPES pH 7.0, 6.73 % w/v PEG 5000 MME and 0.06 M KCl

-
データ収集

回折平均測定温度: 100 K / Serial crystal experiment: N
放射光源由来: シンクロトロン / サイト: SLS / ビームライン: X06DA / 波長: 0.979399 Å
検出器タイプ: DECTRIS PILATUS 2M-F / 検出器: PIXEL / 日付: 2016年8月6日
放射プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長波長: 0.979399 Å / 相対比: 1
反射解像度: 2.8→45.895 Å / Num. obs: 116604 / % possible obs: 99.68 % / 冗長度: 10.7 % / Biso Wilson estimate: 33 Å2 / CC1/2: 0.988 / Rrim(I) all: 0.397 / Net I/σ(I): 6.4
反射 シェル解像度: 2.8→2.87 Å / 冗長度: 10.6 % / Mean I/σ(I) obs: 1.4 / Num. unique obs: 11605 / CC1/2: 0.744 / Rrim(I) all: 1.676 / % possible all: 99.18

-
解析

ソフトウェア
名称バージョン分類
PHENIX1.13_2998精密化
PDB_EXTRACT3.25データ抽出
XDSデータ削減
XSCALEデータスケーリング
PHASER位相決定
精密化構造決定の手法: 分子置換
開始モデル: 1DPS

1dps


解像度: 2.8→45.895 Å / SU ML: 0.36 / 交差検証法: FREE R-VALUE / σ(F): 1.96 / 位相誤差: 30.14 / 立体化学のターゲット値: ML
Rfactor反射数%反射
Rfree0.2433 3511 3.01 %
Rwork0.2017 113092 -
obs0.203 116603 99.69 %
溶媒の処理減衰半径: 0.9 Å / VDWプローブ半径: 1.11 Å / 溶媒モデル: FLAT BULK SOLVENT MODEL
原子変位パラメータBiso max: 136.3 Å2 / Biso mean: 41.1987 Å2 / Biso min: 4.55 Å2
精密化ステップサイクル: final / 解像度: 2.8→45.895 Å
タンパク質核酸リガンド溶媒全体
原子数29740 0 24 484 30248
Biso mean--20.3 22.07 -
残基数----3756
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-ID数Refine-IDRmsタイプ
11A17633X-RAY DIFFRACTION7.828TORSIONAL
12B17633X-RAY DIFFRACTION7.828TORSIONAL
13C17633X-RAY DIFFRACTION7.828TORSIONAL
14D17633X-RAY DIFFRACTION7.828TORSIONAL
15E17633X-RAY DIFFRACTION7.828TORSIONAL
16F17633X-RAY DIFFRACTION7.828TORSIONAL
17G17633X-RAY DIFFRACTION7.828TORSIONAL
18H17633X-RAY DIFFRACTION7.828TORSIONAL
19I17633X-RAY DIFFRACTION7.828TORSIONAL
110J17633X-RAY DIFFRACTION7.828TORSIONAL
111K17633X-RAY DIFFRACTION7.828TORSIONAL
112L17633X-RAY DIFFRACTION7.828TORSIONAL
113M17633X-RAY DIFFRACTION7.828TORSIONAL
114N17633X-RAY DIFFRACTION7.828TORSIONAL
115O17633X-RAY DIFFRACTION7.828TORSIONAL
116P17633X-RAY DIFFRACTION7.828TORSIONAL
117Q17633X-RAY DIFFRACTION7.828TORSIONAL
118R17633X-RAY DIFFRACTION7.828TORSIONAL
119S17633X-RAY DIFFRACTION7.828TORSIONAL
120T17633X-RAY DIFFRACTION7.828TORSIONAL
121U17633X-RAY DIFFRACTION7.828TORSIONAL
122V17633X-RAY DIFFRACTION7.828TORSIONAL
123W17633X-RAY DIFFRACTION7.828TORSIONAL
124X17633X-RAY DIFFRACTION7.828TORSIONAL
LS精密化 シェル

Refine-ID: X-RAY DIFFRACTION / Rfactor Rfree error: 0

解像度 (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection Rwork% reflection obs (%)
2.8-2.83830.34111570.3003441298
2.8383-2.87890.32481400.29014607100
2.8789-2.92190.33961350.2794470100
2.9219-2.96750.32731540.26434579100
2.9675-3.01610.3051570.26544433100
3.0161-3.06810.31761250.25784662100
3.0681-3.12390.35421590.26854460100
3.1239-3.1840.30941550.27284537100
3.184-3.2490.27061290.23854491100
3.249-3.31960.28691590.23174526100
3.3196-3.39680.28521240.23044598100
3.3968-3.48170.28511390.21344436100
3.4817-3.57580.23661330.20764575100
3.5758-3.6810.241450.20034582100
3.681-3.79970.21561070.19424568100
3.7997-3.93550.22591470.1814458100
3.9355-4.0930.21471180.17214565100
4.093-4.27910.18131540.15344524100
4.2791-4.50450.17641470.14934517100
4.5045-4.78650.1721150.1494577100
4.7865-5.15560.17831710.14634485100
5.1556-5.67360.22861590.18074541100
5.6736-6.49260.25551550.20654492100
6.4926-8.17240.19831090.17414567100
8.1724-45.8950.19361180.1715443097
精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

IDL11 (°2)L12 (°2)L13 (°2)L22 (°2)L23 (°2)L33 (°2)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T11 (Å2)T12 (Å2)T13 (Å2)T22 (Å2)T23 (Å2)T33 (Å2)Origin x (Å)Origin y (Å)Origin z (Å)
11.088-0.3294-1.57313.7652-0.47643.2941-0.02880.5672-0.3037-0.8603-0.00040.4016-0.1393-0.51190.15390.5999-0.0905-0.18850.3704-0.26490.2489-46.8509-99.8359-24.1791
20.9863-0.33970.07620.50440.15040.48810.02460.3045-0.057-0.22740.04960.47330.07550.1766-0.2246-0.0261-0.1855-0.22030.2046-0.08040.5934-61.2258-92.3638-9.4101
30.46740.7285-1.10841.2779-1.34913.60530.04880.1084-0.19450.0868-0.1985-0.20030.14650.29030.17050.1519-0.11210.00590.4292-0.12660.8056-70.8403-78.611511.1083
40.5841-0.145-0.2760.88090.66381.1385-0.08950.09260.0033-0.18730.17130.5117-0.1967-0.05290.02580.1665-0.0367-0.1240.20150.01940.4166-58.6004-87.8658-5.6451
50.8361-0.0320.19610.06-0.03750.08420.08770.1639-0.0652-0.097-0.11140.55340.2168-0.0360.0250.0267-0.1313-0.10190.23350.0220.9137-70.4149-91.75110.7583
63.4112-0.2739-1.76722.53620.83032.40360.0740.1296-0.0264-0.3101-0.12660.4519-0.13790.0330.14360.003-0.1185-0.08150.04050.03910.4756-58.6858-97.70252.9947
70.1655-0.17350.06790.97880.260.2434-0.1171-0.1026-0.14310.17110.0991-0.5954-0.13740.11110.0335-0.02040.0097-0.22740.2591-0.03610.6801-4.1585-77.383118.3089
81.7821-1.34232.09242.4157-3.20574.3430.32670.0944-0.1589-0.0619-0.17140.04480.4110.0517-0.07020.3067-0.1298-0.24070.3902-0.08590.4168-23.7454-54.507129.1605
90.5555-0.70060.2491.0954-0.70691.1468-0.1063-0.1868-0.00880.50340.137-0.3278-0.2198-0.05610.12690.0885-0.0932-0.21230.159-0.03340.4357-12.6187-72.612820.889
101.25980.3098-0.18522.00750.52621.4154-0.074-0.21210.197-0.00310.0793-0.354-0.12830.0395-0.04250.1544-0.0322-0.11280.18450.00040.2737-9.9732-61.454417.6518
110.4952-0.1132-0.10230.46420.35130.6704-0.0417-0.02970.21760.01660.03520.5797-0.044-0.08190.06440.09930.0273-0.23840.22960.03060.9239-68.8726-69.7169-4.1415
124.8633.2763-1.73043.2129-2.11011.4990.42-0.64450.12580.3875-0.36520.14150.2328-0.0427-0.04490.5416-0.1306-0.34460.5478-0.02150.3471-45.8185-83.7361-21.5572
130.4059-0.5958-0.55331.37210.32331.1005-0.04320.09150.3419-0.3270.05890.39890.0777-0.08060.06340.0297-0.0439-0.160.23750.03680.6013-57.97-74.0032-5.2394
140.38160.28350.52110.38790.18541.04870.01650.28130.1136-0.4354-0.15340.5426-0.0381-0.27620.07280.16930.0059-0.51270.26830.14120.3547-58.0109-69.7885-15.6559
151.5846-1.4795-0.61612.6210.62010.95490.1348-0.3820.060.5409-0.0242-0.2654-0.0595-0.0601-0.10340.3777-0.0985-0.07990.3288-0.06170.1589-21.4372-68.795239.4878
160.6875-0.7832-0.37672.26071.40660.911-0.0456-0.156-0.10690.5392-0.1001-0.06470.1310.05120.04650.3268-0.0542-0.09240.28390.03850.1922-20.6519-78.454528.934
171.15680.0256-0.04591.0313-0.97040.95030.1003-0.47240.07460.64650.1855-0.0668-0.05010.02740.08980.30420.001-0.34850.3040.1137-0.0106-18.8286-84.11336.8732
180.75850.4943-0.42112.3121-1.62411.7308-0.1224-0.0224-0.3384-0.2941-0.0207-0.28250.21550.07070.14490.1544-0.03060.02480.1844-0.01340.3135-28.4029-109.0353-3.3611
198.5901-5.80124.20923.9201-2.84292.06160.03-0.4065-0.44810.09640.30090.1243-0.254-0.0146-0.18140.31930.01990.05470.3049-0.00770.2333-27.7471-81.6021-21.1004
200.27570.0541-0.1363.1338-2.16231.5096-0.19710.10640.0072-0.45340.17170.02440.1728-0.1281-0.07730.16790.0014-0.04860.1214-0.03150.2562-30.5913-96.8724-4.8028
211.4470.4502-0.31531.5197-0.12281.4745-0.13610.1788-0.2867-0.6404-0.0014-0.11160.2523-0.09670.00530.2502-0.0557-0.08880.1817-0.0430.1577-33.8959-99.1269-15.2297
221.03380.8861-0.42571.7057-1.11450.7793-0.122-0.2690.21930.6452-0.00330.2295-0.0417-0.206-0.08230.54440.02240.25790.3734-0.1150.4437-54.2991-67.189838.6094
230.5569-0.0562-0.76470.7678-0.32541.11890.1868-0.21250.21440.4929-0.11310.4159-0.13320.1372-0.03770.318-0.05540.08620.3082-0.09450.3436-48.1662-61.062529.6815
241.2997-0.07910.66071.7245-0.02691.41230.0155-0.26240.15650.6690.03450.0603-0.05940.0796-0.13250.4452-0.01810.06660.2827-0.09510.2275-40.7173-57.725436.5011
254.6364-0.02850.9550.70630.79443.61170.40710.43110.0401-0.14680.1318-0.03560.29050.0586-0.13540.3712-0.09680.13840.21150.08940.0613-12.2365-77.3157-24.2278
261.26551.0655-0.62924.3502-2.62262.8769-0.0994-0.0982-0.0687-0.3839-0.0683-0.56710.09280.05660.13360.0944-0.00950.05930.1738-0.09410.2675-12.9707-90.662-8.3803
271.4830.86821.7151.49961.22127.14440.0934-0.3201-0.00790.13730.04550.0055-0.3958-0.0341-0.17630.09280.1163-0.07270.27250.08140.4305-20.6339-105.61111.9701
280.25360.7771-0.76272.3648-2.122.66180.0812-0.125-0.03870.00410.041-0.0261-0.04190.07390.03910.11190.0127-0.00840.19240.05570.2482-19.1406-88.7633-2.8825
291.27480.41750.39250.9322-0.35391.0546-0.09950.0723-0.2295-0.17230.1335-0.68890.2633-0.0185-0.03240.041-0.03420.07450.1879-0.01220.5805-9.458-97.4528-1.3023
302.21450.05130.20181.5585-0.67341.287-0.2488-0.04080.221-0.10620.1797-0.4132-0.138-0.208-0.04170.0130.0215-0.08440.162-0.07530.3556-10.547-86.5955.5227
310.92440.8844-0.88432.3794-1.42661.5622-0.06680.08460.3030.10340.1810.3916-0.043-0.1798-0.08670.17920.008-0.01290.1745-0.01140.6172-55.1389-48.385417.4928
320.20960.214-0.06681.32160.13550.8864-0.0114-0.15340.06580.21370.05250.47070.2422-0.08280.20830.0433-0.00420.0980.242-0.05360.764-56.4262-60.420721.2232
331.83390.2975-0.29751.3905-0.7871.78290.00420.15230.13310.44760.01520.7816-0.3131-0.1665-0.07710.04290.06070.06450.2054-0.05180.8572-65.9892-61.289116.6584
343.55070.24382.16420.35850.24061.43620.0656-0.051-0.29510.15490.02280.46540.137-0.0945-0.10910.1532-0.0478-0.0150.20230.0190.4196-54.768-106.972817.362
352.41340.50720.80550.85060.12130.42630.0746-0.0885-0.41620.2793-0.09360.02860.06440.0797-0.0820.2045-0.0511-0.04310.1954-0.00250.3022-42.3621-100.650919.9267
361.5162-0.323-0.15031.77660.49532.20510.0406-0.0952-0.21260.3503-0.09840.10760.16320.02430.03220.1555-0.0167-0.0180.07560.04750.2395-39.5049-110.005918.2282
372.5980.47921.7320.14360.44981.78580.10850.02570.3794-0.42220.04360.3636-0.0981-0.0830.28880.22560.0246-0.31170.20420.15520.5039-42.0068-51.8932-12.5994
382.8631-0.2473-2.90540.13270.2983.6919-0.45510.06310.074-0.10120.22110.0226-0.1947-0.45390.38740.3221-0.0205-0.15750.15890.01550.4015-22.366-48.542312.0692
391.05910.14710.70060.08770.050.49890.0129-0.0160.0879-0.1856-0.02170.1626-0.01740.11510.01580.2638-0.0133-0.08340.17960.03890.4705-36.1246-54.2139-5.1253
402.34140.36390.441.40990.23311.1199-0.05620.32740.5205-0.0736-0.0560.3591-0.19750.03760.12290.1486-0.0216-0.12920.1265-0.02140.5042-38.6363-45.34352.374
413.18590.05681.28990.55210.23890.70760.1268-0.548-0.19070.7478-0.14020.26580.1799-0.0627-0.10620.5695-0.114-0.01340.26170.11380.1394-39.3585-96.870638.8383
420.8946-0.08091.09571.1162-0.41381.85590.0427-0.3222-0.09230.3767-0.07670.2842-0.0201-0.1072-0.02540.3267-0.05760.10420.27440.01170.2683-47.6416-94.509129.5665
431.88960.52430.43162.04560.68291.99240.2348-0.3633-0.08150.6879-0.07810.45650.1107-0.1507-0.2030.4756-0.06250.13650.30240.04260.3148-54.4619-89.662336.0768
441.30530.3825-0.88751.76230.21621.3508-0.0271-0.2376-0.0097-0.1416-0.50310.0652-0.3602-0.29830.27890.0883-0.135-0.12310.2091-0.23510.3265-6.7549-48.23837.3706
455.46130.73623.141.15190.55052.90690.0580.16950.0579-0.1373-0.0192-0.1626-0.07550.26440.010.3022-0.0501-0.05330.21260.04960.32-18.7688-56.1966-7.7071
460.3673-0.7083-0.85744.1575.03266.09260.0741-0.20940.00270.94410.3392-0.67410.2736-0.1983-0.38290.5177-0.0444-0.0630.36320.04520.4058-38.6916-67.0632-21.306
471.35240.59440.71540.56350.31230.8671-0.11330.0440.0081-0.1510.1013-0.1212-0.0792-0.0287-0.08190.1995-0.0514-0.04990.25510.00220.3175-24.0221-59.212-5.6964
482.4229-0.23280.49921.8838-0.54872.3628-0.23250.62850.4038-0.47390.1660.0611-0.0840.3177-0.0450.3091-0.06210.01690.17470.02410.1667-22.8008-61.8491-19.441
493.30350.38451.17942.75610.36373.5093-0.00250.10760.0315-0.2938-0.0005-0.1320.19740.3415-0.07480.23670.03980.06790.1141-0.00810.2936-17.4702-69.6126-10.0541
501.8331-0.8986-1.03632.08661.27731.0349-0.04330.2173-0.2519-0.4799-0.06640.25590.0039-0.12730.0410.4365-0.0104-0.07230.35770.05260.3231-22.9615-107.8678-97.2767
511.3504-0.5369-1.13671.12630.94561.9992-0.20350.0084-0.08940.00350.09440.40910.337-0.05720.10510.4066-0.03920.07190.35750.00720.3509-24.4088-100.1433-85.3904
521.8928-0.0402-0.1512.0007-0.56612.18390.0185-0.0166-0.2267-0.3648-0.0830.37380.1049-0.14360.08450.3061-0.0105-0.01410.27840.01270.5359-31.0949-107.2765-83.8227
532.03470.8102-1.80642.6769-1.65942.27460.1272-0.1084-0.1916-0.06470.3288-0.01570.04610.2704-0.3050.35730.05820.11860.3651-0.01050.881735.4915-104.6411-72.6787
544.0059-4.1624-2.50915.20153.08773.60120.2636-0.337-0.0004-0.07360.1046-0.7871-0.13060.2243-0.23340.31130.0118-0.05550.27940.05050.677828.0591-85.9185-63.0605
552.2626-3.32764.39034.9332-6.54388.71280.4918-0.1583-0.00720.1757-0.419-0.50130.43610.0416-0.10940.4723-0.1025-0.0390.48660.02150.634110.6449-68.0575-54.6829
562.2631-3.098-1.62266.05282.57921.9090.07970.0381-0.0164-0.0495-0.0912-0.4731-0.13-0.00410.05620.2882-0-0.03430.3463-0.00770.552217.5315-83.9147-65.3716
572.1437-1.0004-0.52332.04120.14590.7667-0.0804-0.3960.00450.6106-0.1291-0.48030.02510.18780.1660.3964-0.0107-0.1640.46070.00540.644227.7236-81.8493-54.8724
581.1783-0.33110.10923.60770.45771.8701-0.1213-0.09460.0974-0.0280.2006-0.8780.00260.1994-0.08770.31710.00110.03150.33520.07680.607124.6054-75.7155-69.304
591.7845-0.7145-1.00762.07521.44343.16860.13470.2861-0.1018-0.3037-0.22160.5731-0.3637-0.43860.13520.33550.0005-0.04460.28420.03550.4588-34.4028-83.2347-88.0419
608.90847.0692-5.97515.8051-4.76464.48070.5124-0.46820.64760.0849-0.03470.4644-0.14430.536-0.37020.68060.0509-0.0630.5202-0.11080.3283-11.3259-97.2658-105.494
612.0501-1.0014-1.752.14771.75932.9470.25250.16750.2235-0.3887-0.140.1865-0.2859-0.0998-0.06810.36240.0452-0.00060.30980.0320.3115-23.5587-87.5559-89.1759
621.6099-0.3525-0.0032.31620.36011.74620.15050.3412-0.0398-0.5508-0.10670.5627-0.0949-0.05250.030.44930.0115-0.08530.35870.03980.2909-23.5724-83.301-99.5336
631.6731-1.4338-0.68362.21550.56450.9258-0.1642-0.53910.05030.58140.0881-0.2229-0.02690.1007-0.00220.5779-0.0106-0.13230.5594-0.010.381112.9231-82.3403-44.4145
640.7329-0.0438-0.33732.02061.42711.4047-0.1342-0.2071-0.09020.57670.0797-0.50850.18020.0440.10090.59090.0144-0.10090.36970.05470.375813.6898-92.0036-54.9101
651.9521-0.4199-0.07512.30860.42211.9579-0.1929-0.3858-0.16430.79630.2801-0.28410.25830.2585-0.10120.51330.0279-0.13120.4270.03090.370415.5322-97.6408-46.9183
662.1224-1.60630.56963.85372.21015.0204-0.08210.46450.09640.5088-0.41520.14660.370.26530.59010.39240.0037-0.15460.332-0.00840.33816.3363-132.7185-76.9564
670.9380.6788-0.30264.4368-1.7421.9869-0.1130.0734-0.3482-0.59150.0186-0.22170.1894-0.12990.05430.39840.09050.15270.3503-0.00820.4445.8782-117.993-91.8863
688.389-3.7941.64611.7189-0.73710.32780.1347-0.2327-0.2951-0.31880.17040.1322-0.14980.2413-0.40040.7920.06180.05960.5099-0.03610.32036.7241-95.1248-105.0221
690.560.00860.23511.9243-1.11561.221-0.1257-0.0849-0.0978-0.25490.311-0.1826-0.0141-0.2071-0.10430.51450.05080.04890.3382-0.02180.32492.6078-107.7328-89.6847
701.3804-0.05060.67910.1613-0.50681.82560.16680.2175-0.238-0.5070.1046-0.1968-0.04480.12430.37940.69210.03270.21360.3917-0.09150.26355.8274-114.1483-100.1171
712.2667-0.51450.96223.3434-1.23522.552-0.0291-0.0063-0.2562-0.5687-0.0844-0.22890.1809-0.3280.12630.39340.03210.01960.4021-0.08590.3563-6.4294-112.3689-94.5142
720.38740.5565-0.39661.2894-0.67360.46870.04910.0233-0.02050.34610.22910.1170.0983-0.1499-0.00870.60550.04890.18380.44050.03120.2289-19.9375-80.731-45.3733
731.03180.624-0.52421.6741-0.24520.2935-0.07-0.2680.14030.192-0.01810.0544-0.04950.05280.09370.50770.01230.0690.3320.00450.2694-13.7909-74.6055-54.2771
741.0619-0.04990.15652.1764-0.56881.46650.0482-0.21020.15570.65180.05360.0076-0.2414-0.0946-0.0920.54590.02190.04070.3953-0.02040.228-6.344-71.2349-47.4369
750.70250.6133-0.27770.7486-0.62670.63920.05310.2537-0.2596-0.4412-0.0121-0.5291-0.14840.09150.21230.58760.01190.36290.4065-0.00390.589121.4778-99.9777-96.2874
760.26290.40741.01380.66311.60724.31040.10080.1063-0.3585-0.1564-0.3893-0.2819-0.40970.5160.20750.23510.0372-0.00410.53660.00770.54313.7924-119.0789-71.9078
771.30381.0091-1.54981.9114-1.78852.94150.04880.2058-0.1132-0.2302-0.1627-0.48950.07720.08350.02140.34690.0850.09660.37030.01340.417415.3044-102.2632-86.8462
781.4352-0.0339-0.31291.2375-0.26432.15640.0020.3567-0.6099-0.5695-0.1782-0.33460.51860.05810.08120.58330.03180.22920.3656-0.08480.588421.3791-117.4806-88.9207
792.7480.5416-0.11062.11730.70721.2105-0.101-0.0751-0.0741-0.25530.0166-0.93480.03630.55370.08660.38040.05480.09260.37950.08820.5627.0357-108.4056-81.2125
802.20510.2639-0.19490.84040.76740.80860.0782-0.0093-0.0091-0.3075-0.0487-0.5807-0.08130.1995-0.01810.27790.06540.08460.35290.04570.56724.5229-99.1094-79.9772
811.42691.5439-1.37272.5687-1.93321.5121-0.07870.05280.24710.15520.21740.20280.0717-0.1395-0.17830.42790.04680.08540.3285-0.01260.3722-20.7197-61.8447-66.4337
820.84661.027-0.23761.9135-0.27160.0448-0.0167-0.0870.37130.2028-0.06060.37840.09110.0554-0.03230.47070.03710.13050.3385-0.02010.3106-21.4937-75.8764-64.1495
831.69480.25880.01141.4497-0.51161.6188-0.06390.03640.01180.44660.130.4779-0.0938-0.2284-0.10870.33160.05290.13320.3174-0.00370.3438-30.997-73.7004-66.0583
843.46040.44751.65970.85530.09451.36150.15390.0168-0.04360.1449-0.06040.26380.1361-0.0373-0.18180.3281-0.02290.08280.25320.01590.3568-20.4519-120.5791-66.6407
852.8418-0.45831.1620.1465-0.26340.68840.01420.1619-0.12640.17030.0475-0.0457-0.11820.1069-0.08090.40560.04850.06850.33610.0570.4325-7.9585-114.207-63.9647
861.6967-0.27970.81231.90210.07782.14140.2839-0.0605-0.29850.114-0.1131-0.11710.3629-0.1073-0.11910.3836-0.01630.06540.28990.0620.3626-5.0934-123.5404-65.6628
870.4257-0.24250.24421.35170.18811.5939-0.02330.11-0.0147-0.0330.20.20090.089-0.0452-0.12330.6843-0.0334-0.14720.4560.19370.0246-17.1808-71.319-107.7095
884.80470.37053.4681.30670.60093.648-0.36060.16310.4874-0.3861-0.1461-0.0898-0.0123-0.0250.32190.44640.03790.08090.28980.06820.2432-4.0759-63.1455-92.6627
895.6549-1.0651-5.70340.20221.09365.9626-0.2056-0.19-0.18930.1930.1324-0.38880.1074-0.7030.03460.53330.1260.08160.30580.09270.470912.101-62.066-71.783
901.20230.65051.35140.40330.66881.7418-0.00180.0654-0.0272-0.31510.094-0.1535-0.07310.011-0.04110.42060.06510.03910.3665-0.00560.2001-2.7937-69.3907-87.0131
912.554-0.51311.17361.6523-0.0864.8066-0.08160.46860.4855-0.26250.1349-0.6517-0.30760.26680.13710.344-0.02120.09310.39360.11030.43477.325-56.5002-88.9833
924.6021.57671.8482.59580.67811.6178-0.1669-0.03890.3488-0.05740.0260.2583-0.0044-0.15680.1540.29160.03950.09770.2840.01160.3481-7.2048-59.7786-81.0503
933.68020.97551.25930.67720.16331.29860.2048-0.4999-0.17620.4657-0.11740.00220.1713-0.0087-0.19840.73150.06970.0020.37990.04160.3715-4.8986-110.4045-44.9051
941.70930.23171.27040.77560.58561.22280.0399-0.3983-0.05760.3347-0.05050.1754-0.0299-0.1024-0.04940.40980.00930.10540.41630.09030.3233-13.3431-105.9132-55.5349
951.51870.3870.31322.18050.44711.54950.2718-0.26340.08580.621-0.07340.29210.022-0.075-0.12760.52560.00370.17990.33030.02210.2645-19.3717-104.8749-47.7074
962.24910.90061.7211.01030.68622.8492-0.13230.148-0.1103-0.06140.1051-0.4979-0.15010.31760.04710.31130.0240.13560.35070.03630.476919.2487-67.5945-86.8971
971.2960.49010.22781.01870.01340.19090.0630.235-0.1704-0.27350.1025-0.24750.08570.0415-0.00910.4330.00830.14360.3924-0.00880.27877.8415-76.0607-90.9397
981.5901-0.2958-0.31952.35010.14111.7728-0.14780.39990.2212-0.4764-0.0101-0.63230.13740.20870.06750.45660.02310.18740.39770.05840.394713.9251-77.0695-98.7547
精密化 TLSグループ
IDRefine-IDRefine TLS-IDSelection detailsAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1chain 'A' and (resid 12 through 22 )A12 - 22
2X-RAY DIFFRACTION2chain 'A' and (resid 23 through 52 )A23 - 52
3X-RAY DIFFRACTION3chain 'A' and (resid 53 through 58 )A53 - 58
4X-RAY DIFFRACTION4chain 'A' and (resid 59 through 101 )A59 - 101
5X-RAY DIFFRACTION5chain 'A' and (resid 102 through 138 )A102 - 138
6X-RAY DIFFRACTION6chain 'A' and (resid 139 through 167 )A139 - 167
7X-RAY DIFFRACTION7chain 'B' and (resid 12 through 52 )B12 - 52
8X-RAY DIFFRACTION8chain 'B' and (resid 53 through 58 )B53 - 58
9X-RAY DIFFRACTION9chain 'B' and (resid 59 through 101 )B59 - 101
10X-RAY DIFFRACTION10chain 'B' and (resid 102 through 167 )B102 - 167
11X-RAY DIFFRACTION11chain 'C' and (resid 11 through 52 )C11 - 52
12X-RAY DIFFRACTION12chain 'C' and (resid 53 through 58 )C53 - 58
13X-RAY DIFFRACTION13chain 'C' and (resid 59 through 94 )C59 - 94
14X-RAY DIFFRACTION14chain 'C' and (resid 95 through 167 )C95 - 167
15X-RAY DIFFRACTION15chain 'D' and (resid 12 through 52 )D12 - 52
16X-RAY DIFFRACTION16chain 'D' and (resid 53 through 94 )D53 - 94
17X-RAY DIFFRACTION17chain 'D' and (resid 95 through 167 )D95 - 167
18X-RAY DIFFRACTION18chain 'E' and (resid 9 through 52 )E9 - 52
19X-RAY DIFFRACTION19chain 'E' and (resid 53 through 58 )E53 - 58
20X-RAY DIFFRACTION20chain 'E' and (resid 59 through 94 )E59 - 94
21X-RAY DIFFRACTION21chain 'E' and (resid 95 through 167 )E95 - 167
22X-RAY DIFFRACTION22chain 'F' and (resid 13 through 52 )F13 - 52
23X-RAY DIFFRACTION23chain 'F' and (resid 53 through 101 )F53 - 101
24X-RAY DIFFRACTION24chain 'F' and (resid 102 through 167 )F102 - 167
25X-RAY DIFFRACTION25chain 'G' and (resid 9 through 22 )G9 - 22
26X-RAY DIFFRACTION26chain 'G' and (resid 23 through 52 )G23 - 52
27X-RAY DIFFRACTION27chain 'G' and (resid 53 through 58 )G53 - 58
28X-RAY DIFFRACTION28chain 'G' and (resid 59 through 94 )G59 - 94
29X-RAY DIFFRACTION29chain 'G' and (resid 95 through 141 )G95 - 141
30X-RAY DIFFRACTION30chain 'G' and (resid 142 through 167 )G142 - 167
31X-RAY DIFFRACTION31chain 'H' and (resid 12 through 52 )H12 - 52
32X-RAY DIFFRACTION32chain 'H' and (resid 53 through 101 )H53 - 101
33X-RAY DIFFRACTION33chain 'H' and (resid 102 through 167 )H102 - 167
34X-RAY DIFFRACTION34chain 'I' and (resid 12 through 52 )I12 - 52
35X-RAY DIFFRACTION35chain 'I' and (resid 53 through 94 )I53 - 94
36X-RAY DIFFRACTION36chain 'I' and (resid 95 through 167 )I95 - 167
37X-RAY DIFFRACTION37chain 'J' and (resid 13 through 52 )J13 - 52
38X-RAY DIFFRACTION38chain 'J' and (resid 53 through 58 )J53 - 58
39X-RAY DIFFRACTION39chain 'J' and (resid 59 through 101 )J59 - 101
40X-RAY DIFFRACTION40chain 'J' and (resid 102 through 167 )J102 - 167
41X-RAY DIFFRACTION41chain 'K' and (resid 12 through 52 )K12 - 52
42X-RAY DIFFRACTION42chain 'K' and (resid 53 through 101 )K53 - 101
43X-RAY DIFFRACTION43chain 'K' and (resid 102 through 167 )K102 - 167
44X-RAY DIFFRACTION44chain 'L' and (resid 9 through 22 )L9 - 22
45X-RAY DIFFRACTION45chain 'L' and (resid 23 through 52 )L23 - 52
46X-RAY DIFFRACTION46chain 'L' and (resid 53 through 58 )L53 - 58
47X-RAY DIFFRACTION47chain 'L' and (resid 59 through 101 )L59 - 101
48X-RAY DIFFRACTION48chain 'L' and (resid 102 through 138 )L102 - 138
49X-RAY DIFFRACTION49chain 'L' and (resid 139 through 167 )L139 - 167
50X-RAY DIFFRACTION50chain 'M' and (resid 12 through 52 )M12 - 52
51X-RAY DIFFRACTION51chain 'M' and (resid 53 through 94 )M53 - 94
52X-RAY DIFFRACTION52chain 'M' and (resid 95 through 167 )M95 - 167
53X-RAY DIFFRACTION53chain 'N' and (resid 13 through 22 )N13 - 22
54X-RAY DIFFRACTION54chain 'N' and (resid 23 through 52 )N23 - 52
55X-RAY DIFFRACTION55chain 'N' and (resid 53 through 58 )N53 - 58
56X-RAY DIFFRACTION56chain 'N' and (resid 59 through 86 )N59 - 86
57X-RAY DIFFRACTION57chain 'N' and (resid 87 through 113 )N87 - 113
58X-RAY DIFFRACTION58chain 'N' and (resid 114 through 167 )N114 - 167
59X-RAY DIFFRACTION59chain 'O' and (resid 11 through 52 )O11 - 52
60X-RAY DIFFRACTION60chain 'O' and (resid 53 through 58 )O53 - 58
61X-RAY DIFFRACTION61chain 'O' and (resid 59 through 94 )O59 - 94
62X-RAY DIFFRACTION62chain 'O' and (resid 95 through 167 )O95 - 167
63X-RAY DIFFRACTION63chain 'P' and (resid 12 through 52 )P12 - 52
64X-RAY DIFFRACTION64chain 'P' and (resid 53 through 94 )P53 - 94
65X-RAY DIFFRACTION65chain 'P' and (resid 95 through 167 )P95 - 167
66X-RAY DIFFRACTION66chain 'Q' and (resid 9 through 22 )Q9 - 22
67X-RAY DIFFRACTION67chain 'Q' and (resid 23 through 52 )Q23 - 52
68X-RAY DIFFRACTION68chain 'Q' and (resid 53 through 58 )Q53 - 58
69X-RAY DIFFRACTION69chain 'Q' and (resid 59 through 86 )Q59 - 86
70X-RAY DIFFRACTION70chain 'Q' and (resid 87 through 138 )Q87 - 138
71X-RAY DIFFRACTION71chain 'Q' and (resid 139 through 167 )Q139 - 167
72X-RAY DIFFRACTION72chain 'R' and (resid 13 through 52 )R13 - 52
73X-RAY DIFFRACTION73chain 'R' and (resid 53 through 101 )R53 - 101
74X-RAY DIFFRACTION74chain 'R' and (resid 102 through 167 )R102 - 167
75X-RAY DIFFRACTION75chain 'S' and (resid 12 through 52 )S12 - 52
76X-RAY DIFFRACTION76chain 'S' and (resid 53 through 58 )S53 - 58
77X-RAY DIFFRACTION77chain 'S' and (resid 59 through 94 )S59 - 94
78X-RAY DIFFRACTION78chain 'S' and (resid 95 through 113 )S95 - 113
79X-RAY DIFFRACTION79chain 'S' and (resid 114 through 138 )S114 - 138
80X-RAY DIFFRACTION80chain 'S' and (resid 139 through 167 )S139 - 167
81X-RAY DIFFRACTION81chain 'T' and (resid 12 through 52 )T12 - 52
82X-RAY DIFFRACTION82chain 'T' and (resid 53 through 94 )T53 - 94
83X-RAY DIFFRACTION83chain 'T' and (resid 95 through 167 )T95 - 167
84X-RAY DIFFRACTION84chain 'U' and (resid 12 through 52 )U12 - 52
85X-RAY DIFFRACTION85chain 'U' and (resid 53 through 94 )U53 - 94
86X-RAY DIFFRACTION86chain 'U' and (resid 95 through 167 )U95 - 167
87X-RAY DIFFRACTION87chain 'V' and (resid 12 through 22 )V12 - 22
88X-RAY DIFFRACTION88chain 'V' and (resid 23 through 52 )V23 - 52
89X-RAY DIFFRACTION89chain 'V' and (resid 53 through 58 )V53 - 58
90X-RAY DIFFRACTION90chain 'V' and (resid 59 through 94 )V59 - 94
91X-RAY DIFFRACTION91chain 'V' and (resid 95 through 113 )V95 - 113
92X-RAY DIFFRACTION92chain 'V' and (resid 114 through 167 )V114 - 167
93X-RAY DIFFRACTION93chain 'W' and (resid 12 through 52 )W12 - 52
94X-RAY DIFFRACTION94chain 'W' and (resid 53 through 94 )W53 - 94
95X-RAY DIFFRACTION95chain 'W' and (resid 95 through 167 )W95 - 167
96X-RAY DIFFRACTION96chain 'X' and (resid 10 through 52 )X10 - 52
97X-RAY DIFFRACTION97chain 'X' and (resid 53 through 94 )X53 - 94
98X-RAY DIFFRACTION98chain 'X' and (resid 95 through 167 )X95 - 167

+
万見について

-
お知らせ

-
2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

-
2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

+
2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月：コロナウイルスプロテーアーゼ

+
2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか？ / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

+
2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例：em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

-
万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る