| Entry | Database: PDB / ID: 6zqh |
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| Title | Yeast Uba1 in complex with ubiquitin |
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Components | - Ubiquitin-40S ribosomal protein S31
- Ubiquitin-activating enzyme E1 1
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Keywords | LIGASE / Ubiquitin / E1 |
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| Function / homology | Function and homology information
E1 ubiquitin-activating enzyme / ubiquitin activating enzyme activity / maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) / Antigen processing: Ubiquitination & Proteasome degradation / maintenance of translational fidelity / modification-dependent protein catabolic process / protein tag activity / cytosolic ribosome / ribosomal small subunit assembly / ribosome biogenesis ...E1 ubiquitin-activating enzyme / ubiquitin activating enzyme activity / maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) / Antigen processing: Ubiquitination & Proteasome degradation / maintenance of translational fidelity / modification-dependent protein catabolic process / protein tag activity / cytosolic ribosome / ribosomal small subunit assembly / ribosome biogenesis / cytosolic small ribosomal subunit / ubiquitin-dependent protein catabolic process / cytoplasmic translation / protein ubiquitination / structural constituent of ribosome / DNA damage response / zinc ion binding / ATP binding / metal ion binding / nucleus / cytosol / cytoplasmSimilarity search - Function Ubiquitin-activating enzyme E1, UFD domain / Ubiquitin-activating enzyme E1, FCCH domain / Ubiquitin-activating enzyme E1, conserved site / Ubiquitin-activating enzyme signature 1. / Ubiquitin-activating enzyme E1, FCCH domain / Ubiquitin-activating enzyme E1, four-helix bundle / Ubiquitin-activating enzyme E1 FCCH domain / Ubiquitin-activating enzyme E1 four-helix bundle / Ubiquitin-activating enzyme E1, Cys active site / Ubiquitin-activating enzyme active site. ...Ubiquitin-activating enzyme E1, UFD domain / Ubiquitin-activating enzyme E1, FCCH domain / Ubiquitin-activating enzyme E1, conserved site / Ubiquitin-activating enzyme signature 1. / Ubiquitin-activating enzyme E1, FCCH domain / Ubiquitin-activating enzyme E1, four-helix bundle / Ubiquitin-activating enzyme E1 FCCH domain / Ubiquitin-activating enzyme E1 four-helix bundle / Ubiquitin-activating enzyme E1, Cys active site / Ubiquitin-activating enzyme active site. / Ubiquitin-activating enzyme E1 / Ubiquitin-activating enzyme E1, C-terminal / Ubiquitin-activating enzyme E1, C-terminal domain superfamily / Ubiquitin-activating enzyme E1, SCCH domain / Ubiquitin-activating enzyme E1, FCCH domain superfamily / Ubiquitin fold domain / Ubiquitin-activating enzyme e1 C-terminal domain / Ubiquitin-activating enzyme, SCCH domain / Ubiquitin-activating enzyme, SCCH domain / Ubiquitin/SUMO-activating enzyme E1-like / Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 1 / Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A / ThiF/MoeB/HesA family / THIF-type NAD/FAD binding fold / ThiF family / Ubiquitin-activating enzyme / Elongation Factor Tu (Ef-tu); domain 3 / S27a-like superfamily / Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 / Ribosomal protein S27a / Ribosomal protein S27a / Ribosomal protein S27a / Ubiquitin-like (UB roll) / : / Ubiquitin domain signature. / Ubiquitin conserved site / Ubiquitin domain / Ubiquitin family / Ubiquitin homologues / Ubiquitin domain profile. / Ubiquitin-like domain / Zinc-binding ribosomal protein / Ubiquitin-like domain superfamily / Roll / Beta Barrel / Mainly Beta / Alpha BetaSimilarity search - Domain/homology |
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| Biological species |  Saccharomyces cerevisiae (brewer's yeast) |
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| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.032 Å |
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Authors | Misra, M. / Schindelin, H. |
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| Funding support | Germany, 1items | Organization | Grant number | Country |
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| German Research Foundation (DFG) | GRK 2243 | Germany |
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Citation | Journal: Chemistry / Year: 2021 Title: Development of ADPribosyl Ubiquitin Analogues to Study Enzymes Involved in Legionella Infection. Authors: Kim, R.Q. / Misra, M. / Gonzalez, A. / Tomaskovic, I. / Shin, D. / Schindelin, H. / Filippov, D.V. / Ovaa, H. / Dikic, I. / van der Heden van Noort, G.J. |
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| History | | Deposition | Jul 9, 2020 | Deposition site: PDBE / Processing site: PDBE |
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| Revision 1.0 | Nov 4, 2020 | Provider: repository / Type: Initial release |
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| Revision 1.1 | Jan 13, 2021 | Group: Database references / Category: citation / citation_author Item: _citation.title / _citation_author.identifier_ORCID / _citation_author.name |
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| Revision 1.2 | Mar 3, 2021 | Group: Database references / Category: citation / citation_author Item: _citation.journal_volume / _citation.page_first ..._citation.journal_volume / _citation.page_first / _citation.page_last / _citation.year / _citation_author.identifier_ORCID |
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| Revision 1.3 | Jan 31, 2024 | Group: Data collection / Database references / Refinement description Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession |
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