+Open data
-Basic information
Entry | Database: PDB / ID: 6zqh | ||||||
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Title | Yeast Uba1 in complex with ubiquitin | ||||||
Components |
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Keywords | LIGASE / Ubiquitin / E1 | ||||||
Function / homology | Function and homology information Synthesis of active ubiquitin: roles of E1 and E2 enzymes / E1 ubiquitin-activating enzyme / ubiquitin activating enzyme activity / maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) / Formation of the ternary complex, and subsequently, the 43S complex / Translation initiation complex formation / Ribosomal scanning and start codon recognition / SRP-dependent cotranslational protein targeting to membrane / GTP hydrolysis and joining of the 60S ribosomal subunit / Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) ...Synthesis of active ubiquitin: roles of E1 and E2 enzymes / E1 ubiquitin-activating enzyme / ubiquitin activating enzyme activity / maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) / Formation of the ternary complex, and subsequently, the 43S complex / Translation initiation complex formation / Ribosomal scanning and start codon recognition / SRP-dependent cotranslational protein targeting to membrane / GTP hydrolysis and joining of the 60S ribosomal subunit / Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) / Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) / Formation of a pool of free 40S subunits / Antigen processing: Ubiquitination & Proteasome degradation / L13a-mediated translational silencing of Ceruloplasmin expression / maintenance of translational fidelity / modification-dependent protein catabolic process / protein tag activity / ribosome biogenesis / ribosomal small subunit assembly / cytosolic small ribosomal subunit / ubiquitin-dependent protein catabolic process / cytoplasmic translation / protein ubiquitination / structural constituent of ribosome / ubiquitin protein ligase binding / DNA damage response / ATP binding / nucleus / metal ion binding / cytosol / cytoplasm Similarity search - Function | ||||||
Biological species | Saccharomyces cerevisiae (brewer's yeast) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.032 Å | ||||||
Authors | Misra, M. / Schindelin, H. | ||||||
Funding support | Germany, 1items
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Citation | Journal: Chemistry / Year: 2021 Title: Development of ADPribosyl Ubiquitin Analogues to Study Enzymes Involved in Legionella Infection. Authors: Kim, R.Q. / Misra, M. / Gonzalez, A. / Tomaskovic, I. / Shin, D. / Schindelin, H. / Filippov, D.V. / Ovaa, H. / Dikic, I. / van der Heden van Noort, G.J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6zqh.cif.gz | 1.2 MB | Display | PDBx/mmCIF format |
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PDB format | pdb6zqh.ent.gz | 1 MB | Display | PDB format |
PDBx/mmJSON format | 6zqh.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6zqh_validation.pdf.gz | 481.9 KB | Display | wwPDB validaton report |
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Full document | 6zqh_full_validation.pdf.gz | 503.4 KB | Display | |
Data in XML | 6zqh_validation.xml.gz | 88.3 KB | Display | |
Data in CIF | 6zqh_validation.cif.gz | 131.5 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/zq/6zqh ftp://data.pdbj.org/pub/pdb/validation_reports/zq/6zqh | HTTPS FTP |
-Related structure data
Related structure data | 3cmmS S: Starting model for refinement |
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Similar structure data |
-Links
-Assembly
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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