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Yorodumi- PDB-6zbu: Crystal structure of an NCoR1BBD2-BCL6BTB chimera in complex with... -
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Basic information
| Entry | Database: PDB / ID: 6zbu | ||||||
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| Title | Crystal structure of an NCoR1BBD2-BCL6BTB chimera in complex with the NcoR1 BBD1 corepressor peptide | ||||||
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Keywords | TRANSCRIPTION / BCL6 / NCoR1. | ||||||
| Function / homology | Function and homology informationLoss of MECP2 binding ability to the NCoR/SMRT complex / negative regulation of transcription initiation by RNA polymerase II / negative regulation of androgen receptor signaling pathway / negative regulation of mitotic cell cycle DNA replication / intronic transcription regulatory region sequence-specific DNA binding / regulation of germinal center formation / paraspeckles / negative regulation of B cell apoptotic process / regulation of immune system process / type 2 immune response ...Loss of MECP2 binding ability to the NCoR/SMRT complex / negative regulation of transcription initiation by RNA polymerase II / negative regulation of androgen receptor signaling pathway / negative regulation of mitotic cell cycle DNA replication / intronic transcription regulatory region sequence-specific DNA binding / regulation of germinal center formation / paraspeckles / negative regulation of B cell apoptotic process / regulation of immune system process / type 2 immune response / negative regulation of JNK cascade / positive regulation of regulatory T cell differentiation / nuclear thyroid hormone receptor binding / NR1H2 & NR1H3 regulate gene expression to control bile acid homeostasis / negative regulation of fatty acid metabolic process / negative regulation of glycolytic process / Notch-HLH transcription pathway / FOXO-mediated transcription of cell death genes / locomotor rhythm / histone deacetylase complex / TP53 regulates transcription of several additional cell death genes whose specific roles in p53-dependent apoptosis remain uncertain / regulation of cell differentiation / Differentiation of naive CD4+ T cells to T helper 2 cells (Th2 cells) / regulation of immune response / Regulation of MECP2 expression and activity / transcription repressor complex / Nuclear signaling by ERBB4 / NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux / spindle assembly / Regulation of lipid metabolism by PPARalpha / RORA,B,C and NR1D1 (REV-ERBA) regulate gene expression / Expression of BMAL (ARNTL), CLOCK, and NPAS2 / regulation of cytokine production / negative regulation of miRNA transcription / nuclear receptor binding / transcription corepressor binding / Heme signaling / HDACs deacetylate histones / PPARA activates gene expression / Cytoprotection by HMOX1 / Transcriptional activation of mitochondrial biogenesis / Downregulation of SMAD2/3:SMAD4 transcriptional activity / chromatin DNA binding / Transcriptional regulation of white adipocyte differentiation / negative regulation of cell growth / Nuclear Receptor transcription pathway / DNA-binding transcription repressor activity, RNA polymerase II-specific / mitotic spindle / NOTCH1 Intracellular Domain Regulates Transcription / Activation of anterior HOX genes in hindbrain development during early embryogenesis / Constitutive Signaling by NOTCH1 PEST Domain Mutants / Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants / histone deacetylase binding / HCMV Early Events / sequence-specific double-stranded DNA binding / transcription corepressor activity / regulation of cell population proliferation / regulation of inflammatory response / MLL4 and MLL3 complexes regulate expression of PPARG target genes in adipogenesis and hepatic steatosis / Interleukin-4 and Interleukin-13 signaling / DNA-binding transcription factor binding / sequence-specific DNA binding / RNA polymerase II-specific DNA-binding transcription factor binding / inflammatory response / transcription cis-regulatory region binding / RNA polymerase II cis-regulatory region sequence-specific DNA binding / positive regulation of apoptotic process / DNA-binding transcription factor activity / negative regulation of DNA-templated transcription / chromatin binding / DNA damage response / chromatin / negative regulation of transcription by RNA polymerase II / DNA-templated transcription / zinc ion binding / nucleoplasm / membrane / identical protein binding / nucleus / cytoplasm Similarity search - Function | ||||||
| Biological species | Homo sapiens (human) | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.46 Å | ||||||
Authors | Zacharchenko, T. / Wright, S.C. | ||||||
| Funding support | United Kingdom, 1items
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Citation | Journal: Iucrj / Year: 2021Title: Functionalization of the BCL6 BTB domain into a noncovalent crystallization chaperone. Authors: Zacharchenko, T. / Wright, S. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 6zbu.cif.gz | 453.8 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb6zbu.ent.gz | 316.3 KB | Display | PDB format |
| PDBx/mmJSON format | 6zbu.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/zb/6zbu ftp://data.pdbj.org/pub/pdb/validation_reports/zb/6zbu | HTTPS FTP |
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-Related structure data
| Related structure data | ![]() 6xwfC ![]() 6xxsC ![]() 6xyxSC ![]() 6xzzC ![]() 6y17C S: Starting model for refinement C: citing same article ( |
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| Similar structure data |
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Assembly
| Deposited unit | ![]()
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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About Yorodumi



Homo sapiens (human)
X-RAY DIFFRACTION
United Kingdom, 1items
Citation












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