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- PDB-6yn1: Crystal structure of histone chaperone APLF acidic domain bound t... -

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データを開く

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基本情報

登録情報

データベース: PDB / ID: 6yn1

タイトル

Crystal structure of histone chaperone APLF acidic domain bound to the histone H2A-H2B-H3-H4 octamer

要素

Aprataxin and PNK-like factor
Histone H2A
Histone H2B
Histone H3
Histone H4

キーワード

CHAPERONE / Octamer / aplf / histone

機能・相同性

機能・相同性情報

ADP-D-ribose modification-dependent protein binding / regulation of isotype switching / poly-ADP-D-ribose binding / histone chaperone activity / regulation of epithelial to mesenchymal transition / single strand break repair / DNA repair-dependent chromatin remodeling / site of DNA damage / protein localization to chromatin / 3'-5' exonuclease activity ...
類似検索 - 分子機能

生物種

Xenopus laevis (アフリカツメガエル)

Homo sapiens (ヒト)

手法

X線回折 /

シンクロトロン /

分子置換 / 解像度: 2.35 Å

データ登録者

Corbeski, I. / Guo, X. / Van Ingen, H. / Sixma, T.K.

引用

ジャーナル: Sci Adv / 年: 2022
タイトル: Chaperoning of the histone octamer by the acidic domain of DNA repair factor APLF.
著者: Corbeski, I. / Guo, X. / Eckhardt, B.V. / Fasci, D. / Wiegant, W. / Graewert, M.A. / Vreeken, K. / Wienk, H. / Svergun, D.I. / Heck, A.J.R. / van Attikum, H. / Boelens, R. / Sixma, T.K. / ...

履歴

登録	2020年4月10日	登録サイト: PDBE / 処理サイト: PDBE
改定 1.0	2021年11月17日	Provider: repository / タイプ: Initial release
改定 1.1	2023年10月25日	Group: Data collection / Database references カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / citation / citation_author Item: _citation.country / _citation.journal_abbrev ..._citation.country / _citation.journal_abbrev / _citation.journal_id_CSD / _citation.journal_id_ISSN / _citation.journal_volume / _citation.page_first / _citation.page_last / _citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed / _citation.title / _citation.year
改定 1.2	2024年1月24日	Group: Refinement description / カテゴリ: pdbx_initial_refinement_model

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構造の表示

構造ビューア	分子: MolmilJmol/JSmol

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ダウンロードとリンク

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ダウンロード

PDBx/mmCIF形式	6yn1.cif.gz	1.4 MB	表示	PDBx/mmCIF形式
PDB形式	pdb6yn1.ent.gz	1 MB	表示	PDB形式
PDBx/mmJSON形式	6yn1.json.gz		ツリー表示	PDBx/mmJSON形式
その他	その他のダウンロード

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検証レポート

アーカイブディレクトリ	https://data.pdbj.org/pub/pdb/validation_reports/yn/6yn1 ftp://data.pdbj.org/pub/pdb/validation_reports/yn/6yn1	HTTPS FTP

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関連構造データ

関連構造データ	2hioS S: 精密化の開始モデル
類似構造データ	6yn1-2 6yn1-3 6yn1-4 7k3u-1 1l1l-1 2p6u-d 3g0g-4 3fvq-d 4fm0-d 6znq-2 Omokage検索で類似形状データを探す (詳細) Omokage検索で類似形状データを探す (詳細) Omokage検索で類似形状データを探す (詳細) Omokage検索で類似形状データを探す (詳細) Omokage検索で類似形状データを探す (詳細) 類似検索 - 機能・相同性F&H 検索類似検索 - 機能F&H 検索類似検索 - 相同性F&H 検索

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リンク

PDBのページ	PDBj / wwPDB / NCBI
「今月の分子」の関連する項目	#7 - 2000年7月ヌクレオソーム (Nucleosome) 類似性 (20) #32 - 2002年8月シャペロン (Chaperones) 類似性 (1) #122 - 2010年2月エンハンセオソーム (Enhanceosome) 類似性 (1) #231 - 2019年3月麻疹ウイルスタンパク質 (Measles Virus Proteins) 類似性 (1) #241 - 2020年1月 20年の分子を振り返って (Twenty Years of Molecules) 類似性 (18)

PDBのページ

PDBj /

wwPDB /

NCBI

「今月の分子」の関連する項目

#7 - 2000年7月
ヌクレオソーム (Nucleosome)
類似性 (20)
#32 - 2002年8月
シャペロン (Chaperones)
類似性 (1)
#122 - 2010年2月
エンハンセオソーム (Enhanceosome)
類似性 (1)
#231 - 2019年3月
麻疹ウイルスタンパク質 (Measles Virus Proteins)
類似性 (1)
#241 - 2020年1月
20年の分子を振り返って (Twenty Years of Molecules)
類似性 (18)

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集合体

登録構造単位

A: Histone H2A

B: Histone H2B

C: Histone H3

D: Histone H4

E: Aprataxin and PNK-like factor

F: Histone H2A

G: Histone H2B

H: Histone H3

I: Histone H4

J: Aprataxin and PNK-like factor

K: Histone H2A

L: Histone H2B

M: Histone H3

N: Histone H4

O: Aprataxin and PNK-like factor

P: Histone H2A

Q: Histone H2B

R: Histone H3

S: Histone H4

T: Aprataxin and PNK-like factor

U: Histone H2A

V: Histone H2B

W: Histone H3

X: Histone H4

Y: Aprataxin and PNK-like factor

Z: Histone H2A

a: Histone H2B

b: Histone H3

c: Histone H4

d: Aprataxin and PNK-like factor

e: Histone H2A

f: Histone H2B

g: Histone H3

h: Histone H4

i: Aprataxin and PNK-like factor

j: Histone H2A

k: Histone H2B

l: Histone H3

m: Histone H4

n: Aprataxin and PNK-like factor

ヘテロ分子

395 kDa, 40 ポリマー
Omokage検索でこの集合体の類似形状データを探す (詳細)

A: Histone H2A

B: Histone H2B

C: Histone H3

D: Histone H4

E: Aprataxin and PNK-like factor

F: Histone H2A

G: Histone H2B

H: Histone H3

I: Histone H4

J: Aprataxin and PNK-like factor

ヘテロ分子

登録者が定義した集合体
根拠: SAXS, gel filtration
98.8 kDa, 10 ポリマー
Omokage検索でこの集合体の類似形状データを探す (詳細)

K: Histone H2A

L: Histone H2B

M: Histone H3

N: Histone H4

O: Aprataxin and PNK-like factor

P: Histone H2A

Q: Histone H2B

R: Histone H3

S: Histone H4

T: Aprataxin and PNK-like factor

ヘテロ分子

登録者が定義した集合体
98.8 kDa, 10 ポリマー
Omokage検索でこの集合体の類似形状データを探す (詳細)

U: Histone H2A

V: Histone H2B

W: Histone H3

X: Histone H4

Y: Aprataxin and PNK-like factor

Z: Histone H2A

a: Histone H2B

b: Histone H3

c: Histone H4

d: Aprataxin and PNK-like factor

ヘテロ分子

登録者が定義した集合体
98.7 kDa, 10 ポリマー
Omokage検索でこの集合体の類似形状データを探す (詳細)

e: Histone H2A

f: Histone H2B

g: Histone H3

h: Histone H4

i: Aprataxin and PNK-like factor

j: Histone H2A

k: Histone H2B

l: Histone H3

m: Histone H4

n: Aprataxin and PNK-like factor

ヘテロ分子

登録者が定義した集合体
98.8 kDa, 10 ポリマー
Omokage検索でこの集合体の類似形状データを探す (詳細)

単位格子

Length a, b, c (Å)	105.224, 189.686, 204.324
Angle α, β, γ (deg.)	90.000, 90.000, 90.000
Int Tables number	19
Space group name H-M	P2₁2₁2₁
Space group name Hall	P2ac2ab
Symmetry operation	#1: x,y,z #2: x+1/2,-y+1/2,-z #3: -x,y+1/2,-z+1/2 #4: -x+1/2,-y,z+1/2

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要素

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タンパク質 , 4種, 32分子 AFKPUZejBGLQVafkCHMRWbglDINSXchm

#1: タンパク質	Histone H2A 分子量: 11754.768 Da / 分子数: 8 / 由来タイプ: 組換発現由来: (組換発現) Xenopus laevis (アフリカツメガエル) 遺伝子: hist1h2aj, h2ac14, LOC494591, XELAEV_18003602mg / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: Q6AZJ8
#2: タンパク質	Histone H2B 分子量: 11311.154 Da / 分子数: 8 / 由来タイプ: 組換発現由来: (組換発現) Xenopus laevis (アフリカツメガエル) 遺伝子: XELAEV_18032685mg / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: A0A1L8FQA5
#3: タンパク質	Histone H3 分子量: 11633.632 Da / 分子数: 8 / 由来タイプ: 組換発現由来: (組換発現) Xenopus laevis (アフリカツメガエル) 遺伝子: XELAEV_18002543mg / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: A0A310TTQ1
#4: タンパク質	Histone H4 分子量: 9540.251 Da / 分子数: 8 / 由来タイプ: 組換発現由来: (組換発現) Xenopus laevis (アフリカツメガエル) 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: P62799

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タンパク質・ペプチド , 1種, 8分子 EJOTYdin

#5: タンパク質・ペプチド	Aprataxin and PNK-like factor / Apurinic-apyrimidinic endonuclease APLF / PNK and APTX-like FHA domain-containing protein / XRCC1- ...Apurinic-apyrimidinic endonuclease APLF / PNK and APTX-like FHA domain-containing protein / XRCC1-interacting protein 1 分子量: 4995.819 Da / 分子数: 8 / 由来タイプ: 組換発現 / 由来: (組換発現) Homo sapiens (ヒト) / 遺伝子: APLF, C2orf13, PALF, XIP1 / 発現宿主: Escherichia coli (大腸菌) 参照: UniProt: Q8IW19, DNA-(apurinic or apyrimidinic site) lyase

#5: タンパク質・ペプチド

Aprataxin and PNK-like factor / Apurinic-apyrimidinic endonuclease APLF / PNK and APTX-like FHA domain-containing protein / XRCC1- ...

分子量: 4995.819 Da / 分子数: 8 / 由来タイプ: 組換発現 / 由来: (組換発現)

Homo sapiens (ヒト) / 遺伝子: APLF, C2orf13, PALF, XIP1 / 発現宿主:

Escherichia coli (大腸菌)
参照: UniProt: Q8IW19, DNA-(apurinic or apyrimidinic site) lyase

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非ポリマー , 3種, 430分子

#6: 化合物	ChemComp-GOL / GLYCEROL / GLYCERIN / PROPANE-1,2,3-TRIOL / グリセロ-ル分子量: 92.094 Da / 分子数: 14 / 由来タイプ: 合成 / 式: C₃H₈O₃
#7: 化合物	ChemComp-CL / CHLORIDE ION / クロリド分子量: 35.453 Da / 分子数: 1 / 由来タイプ: 合成 / 式: Cl
#8: 水	ChemComp-HOH / water 分子量: 18.015 Da / 分子数: 415 / 由来タイプ: 天然 / 式: H₂O

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詳細

研究の焦点であるリガンドがあるか	N

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実験情報

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実験

実験	手法: X線回折 / 使用した結晶の数: 1

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試料調製

結晶	マシュー密度: 2.58 Å³/Da / 溶媒含有率: 52.41 % / 解説: 150um x 150um x 150um
結晶化	温度: 277 K / 手法: 蒸気拡散法, シッティングドロップ法詳細: 0.1 M sodium cacodylate pH6.5, 1.0 M tri-sodium citrate

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データ収集

回折	平均測定温度: 100 K / Serial crystal experiment: N
放射光源	由来: シンクロトロン / サイト: NSLS / ビームライン: X6A / 波長: 1 Å
検出器	タイプ: DECTRIS PILATUS 2M-F / 検出器: PIXEL / 日付: 2020年3月16日
放射	プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長	波長: 1 Å / 相対比: 1
反射	解像度: 2.2→20 Å / Num. obs: 206799 / % possible obs: 99.8 % / 冗長度: 6.6 % / B_iso Wilson estimate: 49 Å² / CC_1/2: 0.99 / R_merge(I) obs: 0.139 / R_pim(I) all: 0.058 / R_rim(I) all: 0.151 / Net I/σ(I): 11.1
反射シェル	解像度: 2.2→2.33 Å / R_merge(I) obs: 3.2 / Mean I/σ(I) obs: 0.54 / Num. unique obs: 23719 / CC_1/2: 0.17 / R_rim(I) all: 3.4

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解析

ソフトウェア

名称	バージョン	分類
PHENIX	1.17.1_3660	精密化
XDS		データ削減
Aimless		データスケーリング
PHASER		位相決定

精密化

構造決定の手法:

分子置換
開始モデル: 2HIO

2hio

解像度: 2.35→19.99 Å / SU ML: 0.3289 / 交差検証法: FREE R-VALUE / σ(F): 1.35 / 位相誤差: 25.6704
立体化学のターゲット値: GeoStd + Monomer Library + CDL v1.2

	R_factor	反射数	%反射
R_free	0.2325	8284	4.88 %
R_work	0.1769	161494	-
obs	0.1796	169778	99.96 %

溶媒の処理

減衰半径: 0.9 Å / VDWプローブ半径: 1.11 Å / 溶媒モデル: FLAT BULK SOLVENT MODEL

原子変位パラメータ

B_iso mean: 62.33 Å²

精密化ステップ

サイクル: LAST / 解像度: 2.35→19.99 Å

	タンパク質	核酸	リガンド	溶媒	全体
原子数	24456	0	85	415	24956

拘束条件

Refine-ID	タイプ	Dev ideal	数
X-RAY DIFFRACTION	f_bond_d	0.0088	24902
X-RAY DIFFRACTION	f_angle_d	0.9537	33515
X-RAY DIFFRACTION	f_chiral_restr	0.0548	3838
X-RAY DIFFRACTION	f_plane_restr	0.0049	4281
X-RAY DIFFRACTION	f_dihedral_angle_d	19.0034	9568

LS精密化シェル

解像度 (Å)	R_factor R_free	Num. reflection R_free	R_factor R_work	Num. reflection R_work	Refine-ID	% reflection obs (%)
2.35-2.38	0.363	267	0.3136	5304	X-RAY DIFFRACTION	99.96
2.38-2.4	0.3415	271	0.3003	5364	X-RAY DIFFRACTION	100
2.4-2.43	0.3561	273	0.2946	5310	X-RAY DIFFRACTION	100
2.43-2.46	0.3442	261	0.281	5400	X-RAY DIFFRACTION	99.98
2.46-2.5	0.3159	264	0.2636	5315	X-RAY DIFFRACTION	99.96
2.5-2.53	0.3169	282	0.2618	5324	X-RAY DIFFRACTION	99.98
2.53-2.57	0.296	250	0.2611	5362	X-RAY DIFFRACTION	100
2.57-2.61	0.3329	281	0.2521	5321	X-RAY DIFFRACTION	99.96
2.61-2.65	0.3207	282	0.2438	5353	X-RAY DIFFRACTION	99.98
2.65-2.69	0.2714	242	0.237	5379	X-RAY DIFFRACTION	99.98
2.69-2.74	0.3018	294	0.2365	5297	X-RAY DIFFRACTION	99.96
2.74-2.79	0.2967	287	0.2273	5337	X-RAY DIFFRACTION	99.98
2.79-2.84	0.2821	279	0.2095	5384	X-RAY DIFFRACTION	99.98
2.84-2.9	0.2382	257	0.1988	5328	X-RAY DIFFRACTION	100
2.9-2.96	0.2563	287	0.2021	5353	X-RAY DIFFRACTION	99.96
2.96-3.03	0.2871	269	0.2079	5360	X-RAY DIFFRACTION	99.98
3.03-3.1	0.2497	273	0.1968	5412	X-RAY DIFFRACTION	100
3.1-3.19	0.2409	262	0.1943	5365	X-RAY DIFFRACTION	100
3.19-3.28	0.277	288	0.1979	5348	X-RAY DIFFRACTION	99.98
3.28-3.39	0.2836	284	0.1906	5386	X-RAY DIFFRACTION	100
3.39-3.51	0.244	304	0.1719	5356	X-RAY DIFFRACTION	100
3.51-3.65	0.2123	291	0.1617	5351	X-RAY DIFFRACTION	99.96
3.65-3.81	0.2233	271	0.1538	5392	X-RAY DIFFRACTION	99.96
3.81-4.01	0.2147	298	0.1496	5386	X-RAY DIFFRACTION	100
4.01-4.26	0.2061	289	0.1447	5429	X-RAY DIFFRACTION	99.97
4.26-4.58	0.1786	276	0.1276	5441	X-RAY DIFFRACTION	99.98
4.58-5.04	0.1847	281	0.1266	5438	X-RAY DIFFRACTION	99.98
5.04-5.75	0.1937	272	0.1565	5473	X-RAY DIFFRACTION	100
5.75-7.19	0.2277	290	0.1739	5512	X-RAY DIFFRACTION	99.97
7.19-19.99	0.1692	259	0.1475	5714	X-RAY DIFFRACTION	99.4

精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

ID	L11 (°²)	L12 (°²)	L13 (°²)	L22 (°²)	L23 (°²)	L33 (°²)	S11 (Å °)	S12 (Å °)	S13 (Å °)	S21 (Å °)	S22 (Å °)	S23 (Å °)	S31 (Å °)	S32 (Å °)	S33 (Å °)	T11 (Å²)	T12 (Å²)	T13 (Å²)	T22 (Å²)	T23 (Å²)	T33 (Å²)	Origin x (Å)	Origin y (Å)	Origin z (Å)
1	1.02985953364	-1.22673265195	-2.141211516	5.6558719307	5.61186157558	7.55048646903	-0.0998494208013	0.276955840249	-0.908665362266	-0.0634097537322	-0.600924463146	-0.555194367115	0.529344265363	0.335699930571	0.56880912391	0.745997640521	0.201701749446	0.176598662977	0.472322307081	0.0278759427674	0.720567990598	68.0506834667	-30.1078441898	55.6632519405
2	4.2321183207	-1.12476402036	-4.16738787746	2.02810014787	1.05432855531	4.19680028136	-0.175825987249	-0.493388066547	-0.653452976613	-0.167072299036	-0.0102735075995	-1.10909286915	0.461589817579	1.05338742147	0.323485059738	0.632391138723	0.165324842075	0.0322019743686	0.511757434356	-0.0117589353021	0.583470216606	64.0916216099	-34.9193108434	67.2571204215
3	7.98942925091	-0.757591393224	-1.74296124431	5.06940439603	5.07906887719	5.16395524405	0.467265040528	-0.77869034122	-1.31670573038	0.118952466562	-0.72147273406	-0.740958718543	1.13571865974	0.0695050254892	0.181987734244	0.842518675568	0.0804291913398	0.0158025077383	0.595914409462	0.14867682911	0.617906679544	56.424583315	-41.0476392414	68.8624512582
4	2.41870880017	1.79865161113	-0.360662536839	2.16463822393	0.11451841253	2.84327690695	-0.0382854353705	0.107715024792	0.0198521733988	-0.60406165221	-0.0242011627187	-0.239257638147	0.12084707233	0.219219788368	0.00149387865874	0.549216257838	0.0772857360774	0.0642857919656	0.383375878556	-0.0068817898493	0.297998684411	59.2017743985	-18.0843598251	57.2290934163
5	6.46081712108	-3.19640792082	2.70082078244	7.32638585006	1.21162423515	4.45867840475	-0.106611416851	-0.0676976534302	0.651776438588	-0.0262954584719	0.0118628108565	-0.0245642782484	-0.0809906800532	-0.0673891815912	0.135396719481	0.42684895485	0.0390544547323	0.024796225317	0.330805762875	0.0482836897862	0.370482780162	59.0428066817	-4.86064176397	63.1425895449
6	3.04001026916	1.39527155221	-2.93441114004	2.2003548478	-0.832350584626	2.98165576224	0.37013154851	1.99010763515	0.528375732374	-0.875732691798	-0.113295101885	0.912208029772	-0.561436822884	-0.448008065447	-0.32380030119	0.530362506422	0.0987541112578	-0.057200768236	0.49633214843	0.067358797845	0.490439761703	46.8988791628	-14.4631707498	60.5618638675
7	5.90523237197	2.80441324241	5.76723774636	2.29504348884	2.64007326453	5.69038469286	0.681262954878	-0.348951573363	0.359994051003	0.589368421354	-0.945368654208	1.29067192885	1.08847651837	-0.102653939831	0.475232574033	0.6020006653	0.0949406498412	0.0282082757989	0.552762941505	-0.0328615186429	0.607666381438	49.1124117222	-15.1871350691	70.3669642655
8	7.1266482573	-4.12523593809	1.56947346537	4.25318354972	-3.12907644059	3.08157567197	0.268194661808	0.219372839567	-0.5714434571	0.140283236798	-0.279941285261	0.426123314467	-0.122784018033	0.171426124535	0.154273944739	0.478453677635	0.0203359479135	0.0431700825752	0.445718199139	-0.0273117151804	0.461878506208	51.2871391514	-2.30910696219	68.6819170357
9	7.16925747084	5.25095328547	-5.04544217164	3.82948853538	-3.72843000784	4.69357989016	-0.246849105429	-0.446640580064	-0.192023039304	-0.841933290815	0.4128655018	1.88341021251	0.171522453097	-0.646311702265	-0.253900154426	0.614799705217	0.124442018908	-0.0947816681365	0.46287961587	0.0039510500845	0.630325245803	37.243121557	9.5432491079	64.8346086372
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13	7.91952061425	-4.93659709538	-4.61179581067	7.62996738462	4.61336317132	5.67667332102	0.334549068567	0.425603646909	0.15313029055	-0.615576181162	-0.408836898729	0.0523872188799	-0.139425172517	-0.0185929737465	0.0614381035446	0.58774643511	0.0466301575184	-0.0846825550242	0.464865522289	-0.014402543418	0.324549407521	53.1012415927	-29.9698496857	53.7431160511
14	4.74527917433	-5.48638223638	-6.1854702762	5.89468923222	6.58325311925	8.56043744701	0.507018219634	0.928696349327	-0.277405276202	-0.910919573553	-0.572886363588	0.494686238677	-0.340327004602	-0.598021783256	-0.0104608772372	0.370634784269	-0.0381457249674	-0.0148951026302	0.60622895414	0.0218321508463	0.497106571275	6.55575025514	-14.1166421003	76.8592219946
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18	4.33907693995	-0.450251882584	0.574256461559	7.23679055871	3.69227248711	5.16352283953	0.216192861758	-0.231556718519	-0.0174080174726	-0.342618055673	-0.20141270627	0.36531708827	-0.240588327666	-0.903714664496	-0.0440169968006	0.31958540716	0.00835833222204	-0.0243749305282	0.44013131983	0.0992335195972	0.47434175151	14.6679374425	-16.0468313147	67.2439485961
19	7.41764612047	-6.3929517596	-0.485263229389	8.4705021685	0.754238482295	2.43473789754	0.517359411704	0.454065489449	-0.00141102158671	-1.03277398296	-0.257347226569	-0.214401052669	0.286576653283	-0.0656895580345	-0.228524363199	0.476904851783	-0.0199507201742	-0.0133419664541	0.397156356233	0.0128264973462	0.285708804268	30.6827122629	-26.5260237003	59.3568721055
20	7.22983817142	-1.41225160695	-4.44517761983	7.2000505323	4.75508917138	8.78438075644	-0.527456758973	-0.625973162463	-0.259880865221	0.391049460919	0.0862687307599	-0.140684546211	0.552694625272	0.950331271168	0.426068816611	0.497029140729	0.0271190354284	-0.0458953270124	0.430146287202	0.0693629773164	0.363679819797	34.031893919	-32.2950792976	69.8480714512
21	4.80518669297	-4.02323140156	-5.00619489167	4.93925214835	4.1541810944	5.26517302174	1.09393230247	-0.180918828172	-1.56782830904	1.50676655582	-2.16899873027	-0.357622022153	1.58968436497	-1.62140226288	1.03674455448	0.6839156274	-0.265736061036	0.000712745988023	0.746323969276	-0.134564453637	0.765989943658	12.8366744463	-35.2694863466	61.5542582719
22	7.93572486922	4.65832717501	-5.11262163056	3.74134210085	-5.2533140452	8.46125876657	0.930022599137	0.551317374682	-1.90453487308	-0.718259528732	-0.637441601472	-0.374515760556	1.39818513565	0.738025116562	-0.281091647968	0.793637326535	-0.000976981951867	-0.258390576209	0.626764571335	-0.11515457874	0.873584228615	22.6287681657	-42.5233819629	56.2580681668
23	5.06504171561	-4.43672679442	5.19616253564	9.07513796842	-0.101369943516	9.05059415715	0.638825972027	0.877218060906	-1.8078575249	0.96783910442	-0.670829992542	0.815860562614	0.617567650457	-0.0500724325518	-0.337214002921	0.863633130326	-0.133596209754	-0.250332026068	0.829326436953	0.100485687611	1.16088384886	20.5629966509	-47.1368475672	79.5407896494
24	8.17646914856	5.98834875599	-6.01402651091	6.59840000629	-4.65623751188	4.57965450399	-0.587353359847	-0.42982242837	-1.32864983693	0.0541238803184	0.305972453752	-0.406160066737	2.08071738446	0.129056265424	0.264964264663	0.851106381208	0.124191768649	0.0400733498079	0.525761351479	0.17957792529	0.755159156084	43.070148446	-48.7338250067	88.2502280213
25	3.3860441452	3.5867996484	0.341265964339	3.79992947431	0.14604957632	8.73883291763	-0.011686288727	0.402176420271	-1.78529319556	-1.29656829949	-0.0329482321134	-1.95662243171	1.02906808376	1.55882714279	-0.133887295327	0.895638119652	0.134421846958	0.180745504364	0.60159778236	-0.0583250974224	0.869526122494	53.5967388141	-43.307109757	79.2637768379
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29	4.17766530683	1.94220604463	-3.69429776275	9.57666397633	1.10901787759	4.21788061926	0.500340996836	-2.58603609837	2.3389554869	1.39411427472	0.175546680056	-0.689680728536	-0.560848406326	0.173508944157	-0.980064774377	0.566616081371	0.0253418336958	0.131631956677	0.779282763275	-0.0706543179899	0.695807984102	14.1377054207	-6.41149292285	84.5056278292
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31	5.16853140709	-3.0424562286	1.29430809083	7.22156615474	-0.617559165436	2.10112648661	-0.176908881102	-0.434840270452	-0.32300039427	0.560355025042	0.266774960512	-0.153736571918	0.346862740634	0.162461209113	-0.100900212064	0.567240364799	0.0536992412723	-0.0622752624488	0.547255311328	0.0114394378357	0.392934083077	48.219089621	-35.6818512332	93.2339756985
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65	7.26492757942	-6.11791356065	-1.94410263213	5.54159779578	-0.0767884975839	9.13407902319	0.0182588075318	0.72106272787	1.23716087382	-1.46582197236	0.574758295361	-1.80045938331	-0.772927705435	-0.0967138388154	-0.552083695987	0.588008109072	-0.109382894395	0.323763635528	0.861031968344	-0.257748511691	0.946904250292	59.1714242627	26.5713827462	29.8948512801
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75	5.85982230948	-1.44062053454	-1.99038862728	5.99153865629	-2.54124101841	7.66677374576	0.127879497053	-0.27551520367	0.703058517463	1.14624700515	-0.0721388958306	-0.753298683769	-0.581141312982	1.13783331741	0.0206613474521	0.522837522054	-0.164761177886	-0.0738351362388	0.610756977149	-0.0958310430777	0.519764245854	58.6886792879	31.9912289967	63.4324816305
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77	7.10384931466	3.80304358677	5.61953111177	5.45099358965	3.17455137711	4.45124488433	-0.393860458438	-0.422189798913	1.52624533382	-1.09719372813	0.121147930226	0.27081456481	-0.812048166212	-0.175465696965	0.432912482205	0.764445551829	-0.080115912526	0.128779274299	0.400192281593	0.070173050268	0.730170956926	29.7667040335	50.3504579602	58.5534352963
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97	9.05340279409	-0.384095585127	-0.618346415682	3.31306908216	3.31401386799	3.32093816529	-0.118242258388	-1.49158587722	-0.74353946354	0.770426062623	0.0977086280189	-0.600311449214	0.663975390733	0.609718564307	0.118176654347	0.503331839263	0.0900201715082	0.0391602857198	0.709658933387	0.0938283198402	0.627378061425	4.75274009987	14.0578122728	114.373861254
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100	3.33399916499	3.0661517974	-3.87176584413	2.85566263459	-3.69190643402	4.59266956361	-0.0443769598076	-0.570442214925	1.30020695742	0.434451398329	-0.00925053899181	-0.261281379745	-1.971179712	0.25588000345	0.128502616852	0.754157965783	0.0646079872937	0.131720905877	0.739059252314	-0.103406402473	0.727963832727	1.6500430655	36.1641123728	116.669958147
101	7.99067908018	6.76651766028	-0.223952816514	4.73329018441	-0.768569098277	1.90260250885	-0.202550052893	0.298534135183	-0.236126520185	-0.485175689593	0.161312569566	0.0560910439896	-0.184344804732	-0.385242703808	0.0631243848092	0.412713891681	0.134729570557	0.111497528705	0.788933155632	0.0530835013388	0.498910261072	-8.67516637768	16.98333016	106.286428763
102	7.5044834716	2.18529089357	1.57338700859	4.81604004778	1.20143477523	3.50902244219	0.0355902380369	-0.975489482125	-0.380524345842	0.237494646158	-0.200487892738	0.529817915016	0.314498360578	-0.61057394657	0.116354644203	0.488101940974	-0.00678218416446	0.0759177811065	0.890046965378	0.116726511134	0.497596475881	-15.4611542125	7.29239048163	113.832503147
103	4.93557334559	-4.09114463663	-4.77476294929	7.12311811513	1.97893510285	4.33389639134	0.45264151031	-0.546326169297	0.539911516757	0.275665807769	-0.323998868106	-0.146721942987	-0.308181857156	-0.114775644016	-0.295335067211	0.588553917122	-0.013467667483	0.0541273186407	0.796056896183	0.0119961038041	0.438851791417	-12.3673111144	16.7445102471	123.760469886
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107	8.26494594299	-1.61793321847	-6.7329187054	2.77791565372	1.84827420135	8.85184512833	0.138139609917	-0.441147814704	0.875186781606	0.304076873623	0.278771760107	-0.237712652074	-0.431776676044	0.337608467929	-0.343066626232	0.350154576773	0.0244710970325	-0.0303684706963	0.517457667227	0.0204875162302	0.519358926838	19.7492277447	-1.85594619093	104.995288833
108	4.77950556105	0.827214913791	-5.39830073813	1.15096013708	-1.0295668885	6.10443574264	-0.0873120444566	-0.77505288631	1.01361551569	0.831920950465	-0.425402515129	-0.201479078739	-0.468368006305	2.23568547788	-0.514938368168	0.557936795447	-0.0341248866326	-0.0812625065398	0.858110771636	0.172099788698	0.793988367218	10.3860622895	-15.2851499155	119.51642389
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137	4.38262588668	-1.80126969996	-2.84212767931	2.22335113577	1.80378764224	2.14382815888	0.725482004831	0.158598325184	1.93060179134	-0.0947515974696	-0.548486849687	0.505543360164	-0.0141935145026	-0.537620984956	0.0920839299055	0.662259452251	0.0686302113179	0.185818504468	0.679899337415	0.164993639346	1.04567256814	-1.64021679931	34.7135374421	86.827581305
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150	3.92499871562	2.02551201494	3.94004474693	4.27424365217	-1.4996984619	9.68415676412	0.0554671890767	0.448345755569	0.211783644373	-0.624577767828	0.272459685252	0.0785830806304	-0.562062711038	-0.244784154448	-0.418287973526	0.384177903796	0.0340714718224	0.0480122138498	0.55030342376	0.0668605976865	0.387022348743	-3.33252225329	5.57915326326	8.47082810342
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153	5.7979508316	-3.36480201476	-5.1014453573	2.78934032439	2.53183853926	4.72572196281	-0.0606189652444	1.54568763508	-1.68057999449	-1.06823614676	-0.868732472158	-0.708388664638	-0.925356101686	1.302614116	0.645833710449	0.677760497457	-0.0986661668424	-0.0615189330386	0.997553417795	0.00716416568659	0.929704038533	5.38254378737	9.05838848557	5.98210483773
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157	5.65379506918	-5.621668395	-1.55046002561	5.68799351083	1.45182874244	1.93451695957	0.603025402974	1.01547832228	-0.643811355347	-0.0226916070354	-1.12010421433	0.343455027713	0.113661621068	-0.296876759631	0.59501492452	0.359920652135	0.00122445302332	-0.0450869039234	0.601130895987	-0.00477832883897	0.439163589098	-5.77810868532	-4.95045565878	22.6450787209
158	4.81551293107	4.71430550587	5.50772433719	4.65531820512	5.42130489456	6.30135653774	-1.13308096395	-1.29919418008	1.82926519121	-0.323085171779	0.0773784018566	1.67735301967	-1.81675425298	-2.1201278773	0.689887705642	0.739946870781	0.250429206859	-0.0464339021683	0.969162915011	0.042276084989	0.920499133845	-9.79635156384	13.1445784322	10.1446372939
159	4.9796789514	2.26451351123	2.47250501247	9.86753354633	6.21989904768	4.12212739706	-0.0950507116929	1.12102577736	0.765792369836	-0.523845548656	0.294436548578	1.86031318381	-0.00460343067353	-1.49831351436	-0.222615772258	0.426926785713	0.0328021443156	-0.125361959327	0.797420041144	0.192844271658	0.785987213197	-16.634061211	3.6092957206	5.74296452229
160	3.59827636115	4.10287983482	-5.06043764194	4.69096613528	-5.71760839314	7.08893910354	1.09102939036	-0.273722014127	4.50718203551	1.02921961964	1.26436890727	4.04554259023	-0.892258305373	-1.4583069538	-2.38853476883	0.639734371004	0.021957571857	0.125964602117	0.849286442933	0.0290508662378	1.27684562352	-21.60770203	6.65554828498	30.7078255787
161	9.82739012535	0.185594695465	-5.63771224574	6.50644264619	-0.599111287898	3.43013405204	-0.184130889746	0.281338667084	-1.01551286368	0.840625699828	-0.20174752497	1.3228852969	0.222723090839	-1.75781601207	0.171597969265	0.725023746957	-0.152578921916	0.207724859433	1.09341253163	-0.0516373353966	0.770830252012	-25.0753935427	-14.146813431	43.2325000117
162	7.83867244106	-7.07294406945	-7.28887199053	7.77748593752	6.18431760867	8.52909413719	0.481503972932	0.0341029930887	-0.548118359071	-0.336151497515	-0.968644299262	0.958119096797	0.0130868351798	-1.02563006375	0.584537674512	0.514448614443	-0.219224871472	-0.0738564052247	0.946001953551	-0.0317225012184	0.767087836335	-22.1590077841	-19.0309441287	31.2739565401
163	2.20147153474	-2.8863359169	-1.53553378868	4.19502745769	2.86977818304	3.35822513553	0.569191303044	0.191633764819	-1.40765526115	-0.975461416765	-1.55186597195	1.26489305927	0.58756953714	-0.260514470794	0.809632059665	0.739887939022	-0.200653307806	-0.0788149135207	0.601579059342	-0.0571464377096	0.733297202119	-17.4645987346	-28.1622085336	29.5340533847
164	6.34385936766	5.17005362818	0.369457000936	3.98702880745	0.034089188225	0.929808101938	0.374684951104	0.126040355595	0.0568092054852	0.951092369	-0.344054201515	0.284563478377	0.178264995889	-0.471924568532	0.00483627611237	0.426942357446	-0.096593748665	0.0408254813812	0.731363207605	0.0153482982662	0.350657460728	-11.7603536895	-6.21526885324	41.2491285397
165	3.78109706987	-1.63735123298	-3.72751553303	2.08993777482	1.8145898278	3.97412863992	0.462191794478	-0.268981084475	0.933661449807	-1.15637662688	-0.829373235532	0.0340731184416	-1.01769234686	-0.674046838686	0.597525023801	0.604594948053	0.102472450885	0.00738642245032	0.703945075892	-0.061710384479	0.717180622324	-11.1498153394	12.3462992635	36.8256295832
166	4.87375304923	-1.05907579399	3.13581543465	7.11570674932	-3.13800878906	3.30360005716	0.0810666781241	0.459478547917	-0.195865898648	-0.0950470515258	0.105763386046	0.301136658736	-0.097076610193	-0.342513833375	-0.259269751933	0.354537500728	-0.0265985838404	0.0205141116872	0.65394815382	0.0550203591057	0.398927827762	-3.6854563849	3.74621560965	33.7110789322
167	8.78540312504	6.53334363305	4.71842144222	5.61912862314	4.53570272146	4.07966325712	0.853181638441	-0.691329238927	-0.964167630313	0.554387637834	-0.240534705148	-1.94128679672	-0.00796571912572	-0.0345208850852	-0.470226784491	0.549086856386	-0.0707614817157	-0.0131120878918	0.630178844033	0.0294007775836	0.579027798752	1.19670154943	-5.44583774316	38.4462340731
168	4.5142205121	4.37154052541	2.16879988001	7.1075611519	-0.645295188235	2.81970730701	-0.111852635553	0.336045733929	-0.495346712561	-0.510376719042	0.47467416742	-0.71924069284	-0.0570874676869	0.139496045932	-0.396583110845	0.493977882182	-0.0528362676315	0.0384162063636	0.5762742938	-0.0146611249026	0.437693877336	0.914544244003	1.74255602176	28.9772094348
169	9.23733934421	3.12787347013	0.293854247587	2.14909967911	2.76772973988	6.42810920825	1.40054740948	-0.209833326319	-0.505627577293	0.789518294939	0.215327235037	-1.27194649881	-0.181965900848	0.266811627092	-0.415396397361	0.805474841841	-0.219368883774	-0.013628365215	0.483185401412	-0.0660122257966	0.638477442108	18.4160402287	11.3828970706	32.5827538369
170	2.20925007933	0.619763078612	2.30919245864	2.34919880289	3.28077161998	7.26380560979	0.058766188377	-0.791877856602	-0.173764127704	0.832979802984	0.0299501283268	0.831108751449	0.206347242801	-0.321055141745	0.022516641013	0.495561770873	0.0100981011226	0.0814887326606	0.85700044867	0.0793503117128	0.487554539852	-19.1518961234	0.42537515737	39.047716257
171	1.49829973575	-2.45658483255	0.772971551512	3.2243763849	-1.70407311161	2.36292519599	0.171110517419	0.369252979232	-0.290287059962	-0.574333502378	-0.320690276301	0.371451440205	0.293377811171	-0.474951928955	0.130231231747	0.387672736148	-0.131084047639	0.0128691409279	0.653476840095	-0.0473358283219	0.490285605395	-10.3208951115	-14.1823649039	30.3887123717
172	4.95288293308	0.343719190356	-1.67954006755	3.66958059297	-0.315695021332	2.26810770483	-0.0754801252004	-0.161087758132	-0.502136532071	0.67216314757	-0.0598989418141	0.143495468357	0.23372644022	-0.369159070027	0.142700876682	0.533765838262	-0.159262681069	-0.032010338847	0.722347884206	0.0838900310727	0.417490801831	-10.3122777609	-21.5971296629	42.7368854167
173	5.92883924298	4.82781768013	-6.11980385067	4.06734531265	-4.96312003008	6.38397092395	0.257140779283	-1.04126574151	-0.492846012816	0.129322370437	-0.018402835025	-0.581980536016	-0.274247389541	0.757103773096	-0.320751415542	0.445903152235	0.0834388553787	-0.0405566419199	0.648399524509	-0.139523961965	0.596328219691	38.8762614412	-22.0404370573	21.1320670127
174	4.80876674544	0.680229717875	-0.578012120751	2.34188162746	-3.91021625588	6.85679984828	-0.374962450999	-0.279211079947	-0.1428413814	0.378583317276	-0.0323625891255	-0.171350565031	0.576723052448	0.292601847137	0.21878378591	0.527225578072	-0.0188566989045	-0.143374950532	0.503774735238	0.00360627558858	0.399871807937	20.7011352391	-29.6840398659	38.9761709238
175	3.86441137052	3.46444998673	-1.36335325248	6.58402910229	-2.76836762065	2.47602740936	-0.0507904963095	0.118931657746	-0.0698540263291	-0.294169408665	0.225483909146	0.189874298611	0.441822625968	-0.0559847305484	-0.253171078881	0.319281189582	-0.0107693581908	-0.0664717174365	0.485376356973	-0.0263150355322	0.42486183531	17.8339025769	-23.5911778284	31.7583168159
176	6.52027282195	-3.2709066966	-2.1612998443	8.60924212053	1.56080263954	2.28555455252	-0.0340395095304	-0.42261980944	0.910750175319	0.282041588033	0.335589556163	0.207619739251	-0.0663953825492	0.193901576294	-0.355368513241	0.413203231379	-0.0861298964583	-0.0295518074136	0.470414604878	0.00960376506941	0.366591493507	23.0834431333	-7.20919230313	28.4215046399
177	3.03068513828	-1.44351946902	2.82913711996	3.31068695029	-2.80730474892	3.71157667917	0.234579988034	0.0453777250315	0.0146244849772	0.541710310386	-0.498957000764	-0.66045497454	0.802667530771	0.972947527534	0.185411513199	0.49099337123	-0.0176103651588	-0.116566426017	0.441468433491	0.023775554558	0.476756149772	30.0307123153	-22.5462231511	32.3584963259
178	6.73676213393	-6.93507786654	-6.04026932091	7.62321585075	6.19063621518	5.40730267063	-0.262964952404	-0.216840565372	0.713902193582	-0.124546698378	0.0821029173195	0.137770841593	-0.441169360122	1.16464991149	-0.071329304443	0.470649961473	-0.0556315621794	-0.076119549406	0.621255949504	-0.000585119406651	0.547687090323	33.3696668454	-14.1051837194	26.0390919314
179	3.77907401528	3.17464534121	-1.73187494634	6.05112420047	-1.95290665534	1.43768624425	0.378882479568	-0.942492600628	0.158592080363	0.641506652872	-0.25275660063	0.301131139544	0.152952918742	0.0528134807457	-0.110342815086	0.53159458606	-0.0875403152266	-0.0550194206528	0.556685636372	0.0133476925076	0.315422813174	11.9080027368	-23.7539107729	39.1266346141
180	3.28624863191	-2.44371028895	0.272111073018	6.00556379846	-5.12666189496	5.35546372247	0.200963539252	0.461321114342	0.20357423252	0.226567891823	0.206203592759	1.12913492628	0.282402202148	-0.697666056172	-0.351349372573	0.491104176155	-0.11891375815	-0.0598077218923	0.70008112951	0.0526825459477	0.503807707395	4.84266366694	-27.6379112476	31.2907536908
181	6.66258922237	-2.26060022614	-0.593622903436	8.40448635244	7.3415078754	6.91960513305	-0.0689729763437	-0.189035514018	-0.270508674484	0.925847259755	-0.158472747468	-0.301074693165	0.516164483136	-0.963555879913	0.173301238744	0.602025788072	-0.0481065766574	-0.0972917854206	0.65348022024	0.074565383267	0.400986912371	9.46563349067	-28.6258781459	25.1107692554
182	5.92674683695	-5.03820540008	-7.23225471618	4.37899358765	6.15414661594	8.80387521275	0.215423889651	-0.329491578175	-1.80776750589	-0.411532592559	0.0435679009401	-0.175387686671	1.77205047304	1.01015316341	-0.407388845334	0.914198559373	0.0446654140712	-0.176865729259	0.628200260027	0.157597700557	1.05561633079	27.1987908074	-38.7503307887	36.8305863303
183	6.65869056042	-1.32285869843	-3.33755165841	7.53178788704	4.82432410616	3.99289213575	0.503662590535	-0.993792747187	-0.869019831122	0.669640685041	0.14974050615	-0.0333078916582	0.86254762659	-0.648331043955	-0.593490940088	0.676885654392	-0.16337358412	-0.150921772026	0.640371165106	0.172111556809	0.72736328225	16.5888348559	-40.3900002381	41.3310282698
184	2.94823659839	2.48973104613	-1.86984051674	2.15798357029	-1.77080745516	2.88972351444	0.353336802841	2.37923385558	-5.90748767457	-1.92740280543	0.681575396524	-0.376658313599	0.298724381931	0.91393509626	-0.999747790725	1.41689124013	-0.0628571612594	-0.268071985917	0.731252641032	-0.277788356214	1.62880521284	13.189677649	-48.1336837806	15.9304491154

精密化 TLSグループ

ID	Refine-ID	Refine TLS-ID	Selection details
1	X-RAY DIFFRACTION	1	chain 'A' and (resid 16 through 26 )
2	X-RAY DIFFRACTION	2	chain 'A' and (resid 27 through 36 )
3	X-RAY DIFFRACTION	3	chain 'A' and (resid 37 through 44 )
4	X-RAY DIFFRACTION	4	chain 'A' and (resid 45 through 73 )
5	X-RAY DIFFRACTION	5	chain 'A' and (resid 74 through 89 )
6	X-RAY DIFFRACTION	6	chain 'A' and (resid 90 through 96 )
7	X-RAY DIFFRACTION	7	chain 'A' and (resid 97 through 101 )
8	X-RAY DIFFRACTION	8	chain 'A' and (resid 102 through 111 )
9	X-RAY DIFFRACTION	9	chain 'A' and (resid 112 through 118 )
10	X-RAY DIFFRACTION	10	chain 'B' and (resid 35 through 55 )
11	X-RAY DIFFRACTION	11	chain 'B' and (resid 56 through 83 )
12	X-RAY DIFFRACTION	12	chain 'B' and (resid 84 through 90 )
13	X-RAY DIFFRACTION	13	chain 'B' and (resid 91 through 124 )
14	X-RAY DIFFRACTION	14	chain 'C' and (resid 40 through 56 )
15	X-RAY DIFFRACTION	15	chain 'C' and (resid 57 through 78 )
16	X-RAY DIFFRACTION	16	chain 'C' and (resid 79 through 113 )
17	X-RAY DIFFRACTION	17	chain 'C' and (resid 114 through 133 )
18	X-RAY DIFFRACTION	18	chain 'D' and (resid 26 through 47 )
19	X-RAY DIFFRACTION	19	chain 'D' and (resid 48 through 82 )
20	X-RAY DIFFRACTION	20	chain 'D' and (resid 83 through 101 )
21	X-RAY DIFFRACTION	21	chain 'E' and (resid 459 through 463 )
22	X-RAY DIFFRACTION	22	chain 'E' and (resid 464 through 473 )
23	X-RAY DIFFRACTION	23	chain 'E' and (resid 474 through 487 )
24	X-RAY DIFFRACTION	24	chain 'F' and (resid 16 through 35 )
25	X-RAY DIFFRACTION	25	chain 'F' and (resid 36 through 44 )
26	X-RAY DIFFRACTION	26	chain 'F' and (resid 45 through 73 )
27	X-RAY DIFFRACTION	27	chain 'F' and (resid 74 through 96 )
28	X-RAY DIFFRACTION	28	chain 'F' and (resid 97 through 111 )
29	X-RAY DIFFRACTION	29	chain 'F' and (resid 112 through 118 )
30	X-RAY DIFFRACTION	30	chain 'G' and (resid 36 through 83 )
31	X-RAY DIFFRACTION	31	chain 'G' and (resid 84 through 123 )
32	X-RAY DIFFRACTION	32	chain 'H' and (resid 40 through 56 )
33	X-RAY DIFFRACTION	33	chain 'H' and (resid 57 through 78 )
34	X-RAY DIFFRACTION	34	chain 'H' and (resid 79 through 113 )
35	X-RAY DIFFRACTION	35	chain 'H' and (resid 114 through 133 )
36	X-RAY DIFFRACTION	36	chain 'I' and (resid 26 through 30 )
37	X-RAY DIFFRACTION	37	chain 'I' and (resid 31 through 47 )
38	X-RAY DIFFRACTION	38	chain 'I' and (resid 48 through 82 )
39	X-RAY DIFFRACTION	39	chain 'I' and (resid 83 through 93 )
40	X-RAY DIFFRACTION	40	chain 'I' and (resid 94 through 101 )
41	X-RAY DIFFRACTION	41	chain 'J' and (resid 459 through 468 )
42	X-RAY DIFFRACTION	42	chain 'J' and (resid 469 through 478 )
43	X-RAY DIFFRACTION	43	chain 'J' and (resid 479 through 487 )
44	X-RAY DIFFRACTION	44	chain 'K' and (resid 16 through 36 )
45	X-RAY DIFFRACTION	45	chain 'K' and (resid 37 through 44 )
46	X-RAY DIFFRACTION	46	chain 'K' and (resid 45 through 72 )
47	X-RAY DIFFRACTION	47	chain 'K' and (resid 73 through 89 )
48	X-RAY DIFFRACTION	48	chain 'K' and (resid 90 through 96 )
49	X-RAY DIFFRACTION	49	chain 'K' and (resid 97 through 111 )
50	X-RAY DIFFRACTION	50	chain 'K' and (resid 112 through 118 )
51	X-RAY DIFFRACTION	51	chain 'L' and (resid 36 through 55 )
52	X-RAY DIFFRACTION	52	chain 'L' and (resid 56 through 83 )
53	X-RAY DIFFRACTION	53	chain 'L' and (resid 84 through 123 )
54	X-RAY DIFFRACTION	54	chain 'M' and (resid 39 through 56 )
55	X-RAY DIFFRACTION	55	chain 'M' and (resid 57 through 78 )
56	X-RAY DIFFRACTION	56	chain 'M' and (resid 79 through 113 )
57	X-RAY DIFFRACTION	57	chain 'M' and (resid 114 through 133 )
58	X-RAY DIFFRACTION	58	chain 'N' and (resid 26 through 30 )
59	X-RAY DIFFRACTION	59	chain 'N' and (resid 31 through 40 )
60	X-RAY DIFFRACTION	60	chain 'N' and (resid 41 through 47 )
61	X-RAY DIFFRACTION	61	chain 'N' and (resid 48 through 82 )
62	X-RAY DIFFRACTION	62	chain 'N' and (resid 83 through 93 )
63	X-RAY DIFFRACTION	63	chain 'N' and (resid 94 through 100 )
64	X-RAY DIFFRACTION	64	chain 'O' and (resid 459 through 463 )
65	X-RAY DIFFRACTION	65	chain 'O' and (resid 464 through 473 )
66	X-RAY DIFFRACTION	66	chain 'O' and (resid 482 through 487 )
67	X-RAY DIFFRACTION	67	chain 'P' and (resid 15 through 26 )
68	X-RAY DIFFRACTION	68	chain 'P' and (resid 27 through 44 )
69	X-RAY DIFFRACTION	69	chain 'P' and (resid 45 through 72 )
70	X-RAY DIFFRACTION	70	chain 'P' and (resid 73 through 79 )
71	X-RAY DIFFRACTION	71	chain 'P' and (resid 80 through 89 )
72	X-RAY DIFFRACTION	72	chain 'P' and (resid 90 through 96 )
73	X-RAY DIFFRACTION	73	chain 'P' and (resid 97 through 111 )
74	X-RAY DIFFRACTION	74	chain 'P' and (resid 112 through 118 )
75	X-RAY DIFFRACTION	75	chain 'Q' and (resid 36 through 55 )
76	X-RAY DIFFRACTION	76	chain 'Q' and (resid 56 through 83 )
77	X-RAY DIFFRACTION	77	chain 'Q' and (resid 84 through 90 )
78	X-RAY DIFFRACTION	78	chain 'Q' and (resid 91 through 123 )
79	X-RAY DIFFRACTION	79	chain 'R' and (resid 40 through 56 )
80	X-RAY DIFFRACTION	80	chain 'R' and (resid 57 through 78 )
81	X-RAY DIFFRACTION	81	chain 'R' and (resid 79 through 113 )
82	X-RAY DIFFRACTION	82	chain 'R' and (resid 114 through 133 )
83	X-RAY DIFFRACTION	83	chain 'S' and (resid 25 through 30 )
84	X-RAY DIFFRACTION	84	chain 'S' and (resid 31 through 40 )
85	X-RAY DIFFRACTION	85	chain 'S' and (resid 41 through 47 )
86	X-RAY DIFFRACTION	86	chain 'S' and (resid 48 through 75 )
87	X-RAY DIFFRACTION	87	chain 'S' and (resid 76 through 93 )
88	X-RAY DIFFRACTION	88	chain 'S' and (resid 94 through 101 )
89	X-RAY DIFFRACTION	89	chain 'T' and (resid 459 through 463 )
90	X-RAY DIFFRACTION	90	chain 'T' and (resid 464 through 473 )
91	X-RAY DIFFRACTION	91	chain 'T' and (resid 481 through 487 )
92	X-RAY DIFFRACTION	92	chain 'U' and (resid 15 through 36 )
93	X-RAY DIFFRACTION	93	chain 'U' and (resid 37 through 44 )
94	X-RAY DIFFRACTION	94	chain 'U' and (resid 45 through 72 )
95	X-RAY DIFFRACTION	95	chain 'U' and (resid 73 through 79 )
96	X-RAY DIFFRACTION	96	chain 'U' and (resid 80 through 89 )
97	X-RAY DIFFRACTION	97	chain 'U' and (resid 90 through 96 )
98	X-RAY DIFFRACTION	98	chain 'U' and (resid 97 through 117 )
99	X-RAY DIFFRACTION	99	chain 'V' and (resid 35 through 48 )
100	X-RAY DIFFRACTION	100	chain 'V' and (resid 49 through 55 )
101	X-RAY DIFFRACTION	101	chain 'V' and (resid 56 through 83 )
102	X-RAY DIFFRACTION	102	chain 'V' and (resid 84 through 103 )
103	X-RAY DIFFRACTION	103	chain 'V' and (resid 104 through 123 )
104	X-RAY DIFFRACTION	104	chain 'W' and (resid 40 through 55 )
105	X-RAY DIFFRACTION	105	chain 'W' and (resid 56 through 78 )
106	X-RAY DIFFRACTION	106	chain 'W' and (resid 79 through 113 )
107	X-RAY DIFFRACTION	107	chain 'W' and (resid 114 through 133 )
108	X-RAY DIFFRACTION	108	chain 'X' and (resid 24 through 30 )
109	X-RAY DIFFRACTION	109	chain 'X' and (resid 31 through 47 )
110	X-RAY DIFFRACTION	110	chain 'X' and (resid 48 through 82 )
111	X-RAY DIFFRACTION	111	chain 'X' and (resid 83 through 100 )
112	X-RAY DIFFRACTION	112	chain 'Y' and (resid 459 through 463 )
113	X-RAY DIFFRACTION	113	chain 'Y' and (resid 464 through 468 )
114	X-RAY DIFFRACTION	114	chain 'Y' and (resid 469 through 473 )
115	X-RAY DIFFRACTION	115	chain 'Y' and (resid 474 through 487 )
116	X-RAY DIFFRACTION	116	chain 'Z' and (resid 15 through 26 )
117	X-RAY DIFFRACTION	117	chain 'Z' and (resid 27 through 44 )
118	X-RAY DIFFRACTION	118	chain 'Z' and (resid 45 through 72 )
119	X-RAY DIFFRACTION	119	chain 'Z' and (resid 73 through 88 )
120	X-RAY DIFFRACTION	120	chain 'Z' and (resid 89 through 101 )
121	X-RAY DIFFRACTION	121	chain 'Z' and (resid 102 through 117 )
122	X-RAY DIFFRACTION	122	chain 'a' and (resid 35 through 55 )
123	X-RAY DIFFRACTION	123	chain 'a' and (resid 56 through 83 )
124	X-RAY DIFFRACTION	124	chain 'a' and (resid 84 through 90 )
125	X-RAY DIFFRACTION	125	chain 'a' and (resid 91 through 123 )
126	X-RAY DIFFRACTION	126	chain 'b' and (resid 40 through 56 )
127	X-RAY DIFFRACTION	127	chain 'b' and (resid 57 through 63 )
128	X-RAY DIFFRACTION	128	chain 'b' and (resid 64 through 78 )
129	X-RAY DIFFRACTION	129	chain 'b' and (resid 79 through 113 )
130	X-RAY DIFFRACTION	130	chain 'b' and (resid 114 through 135 )
131	X-RAY DIFFRACTION	131	chain 'c' and (resid 25 through 30 )
132	X-RAY DIFFRACTION	132	chain 'c' and (resid 31 through 47 )
133	X-RAY DIFFRACTION	133	chain 'c' and (resid 48 through 82 )
134	X-RAY DIFFRACTION	134	chain 'c' and (resid 83 through 100 )
135	X-RAY DIFFRACTION	135	chain 'd' and (resid 459 through 463 )
136	X-RAY DIFFRACTION	136	chain 'd' and (resid 464 through 468 )
137	X-RAY DIFFRACTION	137	chain 'd' and (resid 469 through 482 )
138	X-RAY DIFFRACTION	138	chain 'd' and (resid 483 through 487 )
139	X-RAY DIFFRACTION	139	chain 'e' and (resid 16 through 26 )
140	X-RAY DIFFRACTION	140	chain 'e' and (resid 27 through 44 )
141	X-RAY DIFFRACTION	141	chain 'e' and (resid 45 through 72 )
142	X-RAY DIFFRACTION	142	chain 'e' and (resid 73 through 89 )
143	X-RAY DIFFRACTION	143	chain 'e' and (resid 90 through 96 )
144	X-RAY DIFFRACTION	144	chain 'e' and (resid 97 through 117 )
145	X-RAY DIFFRACTION	145	chain 'f' and (resid 36 through 55 )
146	X-RAY DIFFRACTION	146	chain 'f' and (resid 56 through 83 )
147	X-RAY DIFFRACTION	147	chain 'f' and (resid 84 through 90 )
148	X-RAY DIFFRACTION	148	chain 'f' and (resid 91 through 123 )
149	X-RAY DIFFRACTION	149	chain 'g' and (resid 40 through 56 )
150	X-RAY DIFFRACTION	150	chain 'g' and (resid 57 through 78 )
151	X-RAY DIFFRACTION	151	chain 'g' and (resid 79 through 113 )
152	X-RAY DIFFRACTION	152	chain 'g' and (resid 114 through 133 )
153	X-RAY DIFFRACTION	153	chain 'h' and (resid 26 through 30 )
154	X-RAY DIFFRACTION	154	chain 'h' and (resid 31 through 47 )
155	X-RAY DIFFRACTION	155	chain 'h' and (resid 48 through 75 )
156	X-RAY DIFFRACTION	156	chain 'h' and (resid 76 through 93 )
157	X-RAY DIFFRACTION	157	chain 'h' and (resid 94 through 100 )
158	X-RAY DIFFRACTION	158	chain 'i' and (resid 459 through 463 )
159	X-RAY DIFFRACTION	159	chain 'i' and (resid 464 through 473 )
160	X-RAY DIFFRACTION	160	chain 'i' and (resid 482 through 487 )
161	X-RAY DIFFRACTION	161	chain 'j' and (resid 15 through 26 )
162	X-RAY DIFFRACTION	162	chain 'j' and (resid 27 through 36 )
163	X-RAY DIFFRACTION	163	chain 'j' and (resid 37 through 44 )
164	X-RAY DIFFRACTION	164	chain 'j' and (resid 45 through 72 )
165	X-RAY DIFFRACTION	165	chain 'j' and (resid 73 through 79 )
166	X-RAY DIFFRACTION	166	chain 'j' and (resid 80 through 88 )
167	X-RAY DIFFRACTION	167	chain 'j' and (resid 89 through 96 )
168	X-RAY DIFFRACTION	168	chain 'j' and (resid 97 through 111 )
169	X-RAY DIFFRACTION	169	chain 'j' and (resid 112 through 117 )
170	X-RAY DIFFRACTION	170	chain 'k' and (resid 36 through 55 )
171	X-RAY DIFFRACTION	171	chain 'k' and (resid 56 through 83 )
172	X-RAY DIFFRACTION	172	chain 'k' and (resid 84 through 123 )
173	X-RAY DIFFRACTION	173	chain 'l' and (resid 40 through 56 )
174	X-RAY DIFFRACTION	174	chain 'l' and (resid 57 through 78 )
175	X-RAY DIFFRACTION	175	chain 'l' and (resid 79 through 113 )
176	X-RAY DIFFRACTION	176	chain 'l' and (resid 114 through 133 )
177	X-RAY DIFFRACTION	177	chain 'm' and (resid 27 through 40 )
178	X-RAY DIFFRACTION	178	chain 'm' and (resid 41 through 47 )
179	X-RAY DIFFRACTION	179	chain 'm' and (resid 48 through 82 )
180	X-RAY DIFFRACTION	180	chain 'm' and (resid 83 through 93 )
181	X-RAY DIFFRACTION	181	chain 'm' and (resid 94 through 101 )
182	X-RAY DIFFRACTION	182	chain 'n' and (resid 458 through 462 )
183	X-RAY DIFFRACTION	183	chain 'n' and (resid 463 through 482 )
184	X-RAY DIFFRACTION	184	chain 'n' and (resid 483 through 487 )

+
万見について

-
お知らせ

-
2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

-
2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

+
2020年3月5日: 新型コロナウイルスの構造データ

+
2019年1月31日: EMDBのIDの桁数の変更

+
2017年7月12日: PDB大規模アップデート

すべてのお知らせ

-
万見 (Yorodumi)

幾万の構造データを、幾万の視点から

万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る

-
ムービー

-
構造ビューア

+
ビューアのログ

-
このページ

-
このウェブサイト

-
オプション

+
データを開く

-
基本情報

-
構造の表示

-
ダウンロードとリンク

-
ダウンロード

-
検証レポート

-
関連構造データ

-
リンク

-
集合体

-
要素

-
タンパク質 , 4種, 32分子 AFKPUZejBGLQVafkCHMRWbglDINSXchm

-
タンパク質・ペプチド , 1種, 8分子 EJOTYdin

-
非ポリマー , 3種, 430分子

-
詳細

-
実験情報

-
実験

-
試料調製

-
データ収集

-
解析

+
万見について

-
お知らせ

-
2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

-
2020年8月12日: 新型コロナ情報

+
2020年3月5日: 新型コロナウイルスの構造データ

+
2019年1月31日: EMDBのIDの桁数の変更

+
2017年7月12日: PDB大規模アップデート

-
万見 (Yorodumi)

-ムービー

-構造ビューア

+ビューアのログ

-このページ

-このウェブサイト

-オプション

+データを開く

-基本情報

-構造の表示

-ダウンロードとリンク

-ダウンロード

-検証レポート

-関連構造データ

-リンク

-集合体

-要素

-タンパク質 , 4種, 32分子 AFKPUZejBGLQVafkCHMRWbglDINSXchm

-タンパク質・ペプチド , 1種, 8分子 EJOTYdin

-非ポリマー , 3種, 430分子

-詳細

-実験情報

-実験

-試料調製

-データ収集

-解析

+万見について

-お知らせ

-2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

-2020年8月12日: 新型コロナ情報

+2020年3月5日: 新型コロナウイルスの構造データ

+2019年1月31日: EMDBのIDの桁数の変更

+2017年7月12日: PDB大規模アップデート

-万見 (Yorodumi)

-
ムービー

-
構造ビューア

+
ビューアのログ

-
このページ

-
このウェブサイト

-
オプション

+
データを開く

-
基本情報

-
構造の表示

-
ダウンロードとリンク

-
ダウンロード

-
検証レポート

-
関連構造データ

-
リンク

-
集合体

-
要素

-
タンパク質 , 4種, 32分子 AFKPUZejBGLQVafkCHMRWbglDINSXchm

-
タンパク質・ペプチド , 1種, 8分子 EJOTYdin

-
非ポリマー , 3種, 430分子

-
詳細

-
実験情報

-
実験

-
試料調製

-
データ収集

-
解析

+
万見について

-
お知らせ

-
2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

-
2020年8月12日: 新型コロナ情報

+
2020年3月5日: 新型コロナウイルスの構造データ

+
2019年1月31日: EMDBのIDの桁数の変更

+
2017年7月12日: PDB大規模アップデート

-
万見 (Yorodumi)