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Yorodumi- PDB-6xqj: Structure of HIV-1 Vpr in complex with the human nucleotide excis... -
+Open data
-Basic information
Entry | Database: PDB / ID: 6xqj | ||||||
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Title | Structure of HIV-1 Vpr in complex with the human nucleotide excision repair protein hHR23A | ||||||
Components | Protein Vpr,UV excision repair protein RAD23 homolog A | ||||||
Keywords | ANTIVIRAL PROTEIN / Vpr / hHR23A / NER | ||||||
Function / homology | Function and homology information symbiont-mediated arrest of host cell cycle during G2/M transition / regulation of proteasomal ubiquitin-dependent protein catabolic process / proteasome binding / ubiquitin-specific protease binding / polyubiquitin modification-dependent protein binding / positive regulation of viral genome replication / positive regulation of cell cycle / monoatomic ion transmembrane transport / proteasome complex / Josephin domain DUBs ...symbiont-mediated arrest of host cell cycle during G2/M transition / regulation of proteasomal ubiquitin-dependent protein catabolic process / proteasome binding / ubiquitin-specific protease binding / polyubiquitin modification-dependent protein binding / positive regulation of viral genome replication / positive regulation of cell cycle / monoatomic ion transmembrane transport / proteasome complex / Josephin domain DUBs / ubiquitin binding / virion component / nucleotide-excision repair / DNA Damage Recognition in GG-NER / protein destabilization / protein homooligomerization / kinase binding / Formation of Incision Complex in GG-NER / viral penetration into host nucleus / host cell / positive regulation of proteasomal ubiquitin-dependent protein catabolic process / single-stranded DNA binding / proteasome-mediated ubiquitin-dependent protein catabolic process / host extracellular space / damaged DNA binding / symbiont entry into host cell / cell cycle / intracellular membrane-bounded organelle / DNA-templated transcription / host cell nucleus / regulation of DNA-templated transcription / Golgi apparatus / protein-containing complex / nucleoplasm / nucleus / cytoplasm / cytosol Similarity search - Function | ||||||
Biological species | Human immunodeficiency virus type 1 group M subtype B Homo sapiens (human) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Byeon, I.-J.L. / Calero, G. / Wu, Y. / Byeon, C.H. / Gronenborn, A.M. | ||||||
Funding support | United States, 1items
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Citation | Journal: Nat Commun / Year: 2021 Title: Structure of HIV-1 Vpr in complex with the human nucleotide excision repair protein hHR23A. Authors: Byeon, I.L. / Calero, G. / Wu, Y. / Byeon, C.H. / Jung, J. / DeLucia, M. / Zhou, X. / Weiss, S. / Ahn, J. / Hao, C. / Skowronski, J. / Gronenborn, A.M. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6xqj.cif.gz | 3 MB | Display | PDBx/mmCIF format |
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PDB format | pdb6xqj.ent.gz | 2.5 MB | Display | PDB format |
PDBx/mmJSON format | 6xqj.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6xqj_validation.pdf.gz | 407.3 KB | Display | wwPDB validaton report |
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Full document | 6xqj_full_validation.pdf.gz | 1.3 MB | Display | |
Data in XML | 6xqj_validation.xml.gz | 371.5 KB | Display | |
Data in CIF | 6xqj_validation.cif.gz | 492.1 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/xq/6xqj ftp://data.pdbj.org/pub/pdb/validation_reports/xq/6xqj | HTTPS FTP |
-Related structure data
Related structure data | 6xqiC C: citing same article (ref.) |
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Similar structure data | |
Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 26792.789 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Human immunodeficiency virus type 1 group M subtype B (isolate NY5), (gene. exp.) Homo sapiens (human) Strain: isolate NY5 / Gene: vpr, RAD23A / Production host: Escherichia coli (E. coli) / References: UniProt: P12520, UniProt: P54725 |
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#2: Chemical | ChemComp-ZN / |
Has ligand of interest | Y |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
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