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Open data
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Basic information
Entry | Database: PDB / ID: 6ww6 | ||||||
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Title | Crystal structure of EutV bound to RNA | ||||||
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![]() | RNA BINDING PROTEIN/RNA / RNA binding / ANTAR domain / antitermination / RNA BINDING PROTEIN / RNA BINDING PROTEIN-RNA complex | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Ataide, S.F. / Walshe, J.L. | ||||||
![]() | ![]() Title: Structural characterization of the ANTAR antiterminator domain bound to RNA. Authors: Walshe, J.L. / Siddiquee, R. / Patel, K. / Ataide, S.F. | ||||||
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 131.7 KB | Display | ![]() |
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PDB format | ![]() | 96.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 476.6 KB | Display | ![]() |
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Full document | ![]() | 478.9 KB | Display | |
Data in XML | ![]() | 16.8 KB | Display | |
Data in CIF | ![]() | 22.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 6wshSC S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 21529.006 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Details: Dimeric EutV bound simultaneously to two seperate dual hexaloops RNA molecules. Each EutV chain binds a single hexaloop from different RNA molecules with the 2nd hexaloop binding to the ...Details: Dimeric EutV bound simultaneously to two seperate dual hexaloops RNA molecules. Each EutV chain binds a single hexaloop from different RNA molecules with the 2nd hexaloop binding to the symmetry related EutV chain in a neighbouring ASUs Source: (gene. exp.) ![]() ![]() Gene: BZG32_08120, CUN08_06285, DVW78_01210, FKY84_00940, KUB3007_C13700 Production host: ![]() ![]() #2: RNA chain | Mass: 17507.568 Da / Num. of mol.: 4 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() #3: Chemical | Has ligand of interest | N | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.18 Å3/Da / Density % sol: 61.34 % |
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Crystal grow | Temperature: 291.15 K / Method: vapor diffusion, hanging drop / pH: 7.5 Details: 0.1 M Sodium chloride 0.1 M HEPES 1.4-1.8 M Ammonium sulfate |
-Data collection
Diffraction | Mean temperature: 80 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS EIGER X 16M / Detector: PIXEL / Date: Sep 17, 2017 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9537 Å / Relative weight: 1 |
Reflection | Resolution: 3.8→47.19 Å / Num. obs: 14773 / % possible obs: 99.5 % / Redundancy: 6.7 % / Biso Wilson estimate: 129.7 Å2 / CC1/2: 0.998 / Rmerge(I) obs: 0.151 / Rpim(I) all: 0.084 / Net I/σ(I): 9.1 |
Reflection shell | Resolution: 3.8→4.25 Å / Redundancy: 6.7 % / Rmerge(I) obs: 0.799 / Mean I/σ(I) obs: 2.3 / Num. unique obs: 4093 / CC1/2: 0.733 / Rpim(I) all: 0.489 / % possible all: 98.9 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 6WSH Resolution: 3.8→47.19 Å / SU ML: 0.4632 / Cross valid method: FREE R-VALUE / σ(F): 1.34 / Phase error: 27.9921 Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 158.4 Å2 | ||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 3.8→47.19 Å
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Refine LS restraints |
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LS refinement shell |
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