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Open data
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Basic information
Entry | Database: PDB / ID: 6wil | ||||||
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Title | CdiB from Acinetobacter baumannii | ||||||
![]() | Hemolysin activator protein CdiB | ||||||
![]() | MEMBRANE PROTEIN / TRANSPORT PROTEIN / TPSB / OMP85 / CDIB | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Guerin, J. / Botos, I. / Buchanan, S.K. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Structural insight into toxin secretion by contact dependent growth inhibition transporters. Authors: Guerin, J. / Botos, I. / Zhang, Z. / Lundquist, K. / Gumbart, J.C. / Buchanan, S.K. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 118.3 KB | Display | ![]() |
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PDB format | ![]() | 95.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 618.1 KB | Display | ![]() |
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Full document | ![]() | 621.8 KB | Display | |
Data in XML | ![]() | 20.8 KB | Display | |
Data in CIF | ![]() | 27.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 63381.223 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Gene: ACICU_01912 / Production host: ![]() ![]() | ||||||||
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#2: Chemical | #3: Chemical | ChemComp-C8E / ( | #4: Chemical | #5: Water | ChemComp-HOH / | Has ligand of interest | N | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.93 Å3/Da / Density % sol: 58.07 % |
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Crystal grow | Temperature: 294 K / Method: vapor diffusion, hanging drop Details: 100mM Tris HCl pH8.0 200mM LiSU 11% PEG400 23% Ethylene glycol |
-Data collection
Diffraction | Mean temperature: 90 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: RAYONIX MX300-HS / Detector: CCD / Date: Jun 24, 2017 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2.4→50 Å / Num. obs: 27153 / % possible obs: 97 % / Redundancy: 5.8 % / CC1/2: 0.99 / Rmerge(I) obs: 0.1 / Net I/σ(I): 10.1 |
Reflection shell | Resolution: 2.4→2.49 Å / Redundancy: 5.6 % / Rmerge(I) obs: 1.3 / Mean I/σ(I) obs: 1.3 / Num. unique obs: 2422 / CC1/2: 0.61 / % possible all: 82.4 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso max: 185.39 Å2 / Biso mean: 59.6325 Å2 / Biso min: 19.43 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: final / Resolution: 2.4→44.007 Å
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LS refinement shell | Refine-ID: X-RAY DIFFRACTION / Rfactor Rfree error: 0
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