Mass: 20635.955 Da / Num. of mol.: 1 / Mutation: N125D Source method: isolated from a genetically manipulated source Details: No electron density for the last three residues. / Source: (gene. exp.) Homo sapiens (human) / Gene: CRYGD, CRYG4 / Production host: Escherichia coli BL21 (bacteria) / References: UniProt: P07320
Resolution: 1.15→28.17 Å / SU ML: 0.08 / Cross valid method: THROUGHOUT / σ(F): 1.35 / Phase error: 16.14 Details: Anisotropic ADPs refined for all non-hydrogen protein atoms. Explicit riding hydrogens added to model for refinement.
Rfactor
Num. reflection
% reflection
Rfree
0.1722
2924
5 %
Rwork
0.1509
-
-
obs
0.152
58458
99.33 %
Solvent computation
Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å
Refinement step
Cycle: LAST / Resolution: 1.15→28.17 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
1425
0
0
193
1618
Refine LS restraints
Refine-ID
Type
Dev ideal
Number
X-RAY DIFFRACTION
f_bond_d
0.011
1530
X-RAY DIFFRACTION
f_angle_d
1.214
2077
X-RAY DIFFRACTION
f_dihedral_angle_d
13.158
225
X-RAY DIFFRACTION
f_chiral_restr
0.105
199
X-RAY DIFFRACTION
f_plane_restr
0.008
278
LS refinement shell
Resolution (Å)
Rfactor Rfree
Num. reflection Rfree
Rfactor Rwork
Num. reflection Rwork
Refine-ID
% reflection obs (%)
1.15-1.17
0.2184
126
0.1888
2388
X-RAY DIFFRACTION
90
1.17-1.19
0.2046
133
0.1743
2540
X-RAY DIFFRACTION
97
1.19-1.21
0.2146
137
0.1633
2591
X-RAY DIFFRACTION
99
1.21-1.23
0.2144
138
0.1482
2623
X-RAY DIFFRACTION
100
1.23-1.26
0.1723
139
0.1416
2639
X-RAY DIFFRACTION
100
1.26-1.29
0.184
139
0.1382
2638
X-RAY DIFFRACTION
100
1.29-1.32
0.1661
137
0.1293
2593
X-RAY DIFFRACTION
100
1.32-1.35
0.1692
140
0.1283
2662
X-RAY DIFFRACTION
100
1.35-1.39
0.1695
137
0.1243
2612
X-RAY DIFFRACTION
100
1.39-1.43
0.1656
139
0.1272
2638
X-RAY DIFFRACTION
100
1.43-1.47
0.1716
140
0.1303
2650
X-RAY DIFFRACTION
100
1.47-1.52
0.1635
138
0.1273
2633
X-RAY DIFFRACTION
100
1.52-1.59
0.1524
140
0.1248
2649
X-RAY DIFFRACTION
100
1.59-1.66
0.1478
140
0.1281
2662
X-RAY DIFFRACTION
100
1.66-1.75
0.1621
139
0.1295
2656
X-RAY DIFFRACTION
100
1.75-1.85
0.1786
141
0.1398
2662
X-RAY DIFFRACTION
100
1.85-2
0.1599
141
0.1376
2682
X-RAY DIFFRACTION
100
2-2.2
0.1706
141
0.1404
2680
X-RAY DIFFRACTION
100
2.2-2.52
0.1712
142
0.1493
2710
X-RAY DIFFRACTION
100
2.52-3.17
0.1915
145
0.1728
2740
X-RAY DIFFRACTION
100
3.17-28.17
0.1675
152
0.1713
2886
X-RAY DIFFRACTION
100
+
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