- PDB-6vzf: Crystal Structure of Atg11 Coiled-Coil 3 -
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Basic information
Entry
Database: PDB / ID: 6vzf
Title
Crystal Structure of Atg11 Coiled-Coil 3
Components
Autophagy-related protein 11
Keywords
STRUCTURAL PROTEIN / coiled-coil / autophagy / scaffold
Function / homology
Function and homology information
regulation of cellular response to phosphate starvation / autophagy of peroxisome / Atg1/ULK1 kinase complex / Macroautophagy / cytoplasm to vacuole targeting by the Cvt pathway / positive regulation of autophagosome assembly / autophagy of mitochondrion / protein localization to phagophore assembly site / phagophore assembly site membrane / piecemeal microautophagy of the nucleus ...regulation of cellular response to phosphate starvation / autophagy of peroxisome / Atg1/ULK1 kinase complex / Macroautophagy / cytoplasm to vacuole targeting by the Cvt pathway / positive regulation of autophagosome assembly / autophagy of mitochondrion / protein localization to phagophore assembly site / phagophore assembly site membrane / piecemeal microautophagy of the nucleus / protein-containing complex localization / phagophore assembly site / reticulophagy / vacuolar membrane / extrinsic component of membrane / autophagosome assembly / SNARE binding / autophagy / molecular adaptor activity / positive regulation of protein phosphorylation / protein kinase binding Similarity search - Function
Autophagy protein ATG17-like domain / Autophagy protein ATG17-like domain / Autophagy-related protein 11, C-terminal / Autophagy-related protein 11 / Autophagy-related protein 11 Similarity search - Domain/homology
Method to determine structure: SAD / Resolution: 2.03→34.61 Å / Cor.coef. Fo:Fc: 0.946 / Cor.coef. Fo:Fc free: 0.933 / SU B: 2.842 / SU ML: 0.078 / SU R Cruickshank DPI: 0.119 / Cross valid method: THROUGHOUT / σ(F): 0 / ESU R: 0.119 / ESU R Free: 0.115 Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.2459
781
5.2 %
RANDOM
Rwork
0.2263
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obs
0.2273
14270
99.93 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å
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