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Yorodumi- PDB-6t2b: Glycoside hydrolase family 109 from Akkermansia muciniphila in co... -
+Open data
-Basic information
Entry | Database: PDB / ID: 6t2b | |||||||||
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Title | Glycoside hydrolase family 109 from Akkermansia muciniphila in complex with GalNAc and NAD+. | |||||||||
Components | Glycosyl hydrolase family 109 protein 2 | |||||||||
Keywords | HYDROLASE / Glycoside hydrolase / inverting / retaining | |||||||||
Function / homology | Function and homology information hydrolase activity, acting on glycosyl bonds / Hydrolases; Glycosylases; Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds / metabolic process / nucleotide binding Similarity search - Function | |||||||||
Biological species | Akkermansia muciniphila (bacteria) | |||||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.13 Å | |||||||||
Authors | Chaberski, E.K. / Fredslund, F. / Teze, D. / Shuoker, B. / Kunstmann, S. / Karlsson, E.N. / Hachem, M.A. / Welner, D.H. | |||||||||
Funding support | Denmark, 1items
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Citation | Journal: Acs Catalysis / Year: 2020 Title: The Catalytic Acid-Base in GH109 Resides in a Conserved GGHGG Loop and Allows for Comparable alpha-Retaining and beta-Inverting Activity in an N-Acetylgalactosaminidase from Akkermansia muciniphila Authors: Teze, D. / Shuoker, B. / Chaberski, E.K. / Kunstmann, S. / Fredslund, F. / Nielsen, T.S. / Stender, E.G.P. / Peters, G.H.J. / Nordberg Karlsson, E. / Welner, D.H. / Abou Hachem, M. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6t2b.cif.gz | 849.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6t2b.ent.gz | 585.3 KB | Display | PDB format |
PDBx/mmJSON format | 6t2b.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6t2b_validation.pdf.gz | 1.5 MB | Display | wwPDB validaton report |
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Full document | 6t2b_full_validation.pdf.gz | 1.5 MB | Display | |
Data in XML | 6t2b_validation.xml.gz | 74.9 KB | Display | |
Data in CIF | 6t2b_validation.cif.gz | 106.8 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/t2/6t2b ftp://data.pdbj.org/pub/pdb/validation_reports/t2/6t2b | HTTPS FTP |
-Related structure data
Related structure data | 2ixaS S: Starting model for refinement |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: 1
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