+Open data
-Basic information
Entry | Database: PDB / ID: 6scw | ||||||
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Title | SH3-subunit of chicken alpha spectrin solved by NMR | ||||||
Components | Spectrin alpha chain, non-erythrocytic 1 isoform X11 | ||||||
Keywords | PEPTIDE BINDING PROTEIN / beta-barrel / binding-domain / membrane-ancor / spectrin | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Sus scrofa (pig) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Grohe, K. / Hebrank, C. / Linser, R. | ||||||
Citation | Journal: Structure / Year: 2020 Title: Protein Motional Details Revealed by Complementary Structural Biology Techniques. Authors: Grohe, K. / Patel, S. / Hebrank, C. / Medina, S. / Klein, A. / Rovo, P. / Vasa, S.K. / Singh, H. / Vogeli, B. / Schafer, L.V. / Linser, R. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6scw.cif.gz | 234.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6scw.ent.gz | 197.1 KB | Display | PDB format |
PDBx/mmJSON format | 6scw.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6scw_validation.pdf.gz | 400.5 KB | Display | wwPDB validaton report |
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Full document | 6scw_full_validation.pdf.gz | 452.2 KB | Display | |
Data in XML | 6scw_validation.xml.gz | 12.8 KB | Display | |
Data in CIF | 6scw_validation.cif.gz | 19.4 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/sc/6scw ftp://data.pdbj.org/pub/pdb/validation_reports/sc/6scw | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 7229.244 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Sus scrofa (pig) / Production host: Escherichia coli BL21 (bacteria) / References: UniProt: A0A480YJK9, UniProt: A0A480YEE4*PLUS |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Type: solution Contents: 12 mg/L 15N, 13C SH3-domain of chicken alpha spectrin, 95% H2O/5% D2O Details: solution state NMR-sample in citric acid buffer at pH 3.5 and 298 K Label: 15N, 13C / Solvent system: 95% H2O/5% D2O |
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Sample | Conc.: 12 mg/L / Component: SH3-domain of chicken alpha spectrin / Isotopic labeling: 15N, 13C |
Sample conditions | Ionic strength: 3 (cirtic acid) M / Label: 13C, 15N / pH: 3.5 / Pressure: 1 atm / Temperature: 295 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE III / Manufacturer: Bruker / Model: AVANCE III / Field strength: 800 MHz |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 2 / Details: 200000 steps | ||||||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||||||
NMR ensemble | Conformer selection criteria: target function / Conformers calculated total number: 800 / Conformers submitted total number: 10 |