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Open data
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Basic information
Entry | Database: PDB / ID: 6ry9 | ||||||
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Title | Winter flounder 1a-1 in SDS micelles | ||||||
![]() | Pleurocidin-like prepropolypeptide | ||||||
![]() | ANTIMICROBIAL PROTEIN / Winter Flounder / Antimicrobial peptide / AMP | ||||||
Function / homology | Pleurocidin / Pleurocidin family / defense response to bacterium / Pleurocidin-like prepropolypeptide![]() | ||||||
Biological species | ![]() | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
![]() | Clarke, M. / Mason, A.J. | ||||||
![]() | ![]() Title: Winter flounder 1a-1 in SDS micelles Authors: Clarke, M. / Mason, A.J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 858 KB | Display | ![]() |
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PDB format | ![]() | 726 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data | |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein/peptide | Mass: 2965.640 Da / Num. of mol.: 1 / Source method: obtained synthetically Source: (synth.) ![]() References: UniProt: Q90WJ0 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||
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NMR experiment |
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Sample preparation
Details | Type: micelle Contents: 0.5 mM NA WF 1a-1, 50 mM U-98% 2H deuterated sodium dodecyl sulphate (d-25) SDS, 0.05 w/w NA TSP, 90% H2O/10% D2O Label: WF1a-1 / Solvent system: 90% H2O/10% D2O | |||||||||||||||||||||
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Sample |
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Sample conditions |
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-NMR measurement
NMR spectrometer | Type: Bruker AVANCE / Manufacturer: Bruker / Model: AVANCE / Field strength: 600 MHz |
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Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 5 | ||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 1000 / Conformers submitted total number: 100 |