Entry Database : PDB / ID : 6qlb Structure visualization Downloads & linksTitle Calpain small subunit 1, RNA-binding protein Hfq ComponentsCalpain small subunit 1 RNA-binding protein Hfq DetailsKeywords DNA BINDING PROTEIN / Calpain-1 / PEF(S) / Hfq / E.coli / Chaperone / Calcium binding / EF-Hand / Complex / 3D Structure Determination / Contamination / Contaminant / RNA binding / DNA binding / Cysteine / Protease / NucleotideFunction / homology Function and homology informationFunction Domain/homology Component
sRNA-mediated post-transcriptional gene silencing / positive regulation of translation, ncRNA-mediated / calpain complex / bacterial nucleoid / regulation of translation, ncRNA-mediated / RNA folding chaperone / bent DNA binding / calcium-dependent cysteine-type endopeptidase activity / regulation of RNA stability / Formation of the cornified envelope ... sRNA-mediated post-transcriptional gene silencing / positive regulation of translation, ncRNA-mediated / calpain complex / bacterial nucleoid / regulation of translation, ncRNA-mediated / RNA folding chaperone / bent DNA binding / calcium-dependent cysteine-type endopeptidase activity / regulation of RNA stability / Formation of the cornified envelope / tRNA processing / Deregulated CDK5 triggers multiple neurodegenerative pathways in Alzheimer's disease models / regulation of macroautophagy / Degradation of the extracellular matrix / Turbulent (oscillatory, disturbed) flow shear stress activates signaling by PIEZO1 and integrins in endothelial cells / High laminar flow shear stress activates signaling by PIEZO1 and PECAM1:CDH5:KDR in endothelial cells / tRNA binding / positive regulation of cell population proliferation / calcium ion binding / regulation of DNA-templated transcription / proteolysis / DNA binding / RNA binding / extracellular exosome / ATP binding / membrane / plasma membrane / cytosol Similarity search - Function RNA-binding protein Hfq / Hfq protein / SH3 type barrels. - #100 / : / Sm domain profile. / LSM domain superfamily / EF-hand / Recoverin; domain 1 / SH3 type barrels. / EF-Hand 1, calcium-binding site ... RNA-binding protein Hfq / Hfq protein / SH3 type barrels. - #100 / : / Sm domain profile. / LSM domain superfamily / EF-hand / Recoverin; domain 1 / SH3 type barrels. / EF-Hand 1, calcium-binding site / EF-hand calcium-binding domain. / EF-hand calcium-binding domain profile. / EF-hand domain / EF-hand domain pair / Roll / Orthogonal Bundle / Mainly Beta / Mainly Alpha Similarity search - Domain/homologyBiological species Homo sapiens (human)Escherichia coli (E. coli)Method X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution : 2.32 Å DetailsAuthors Rizkallah, P.J. / Cresser-Brown, J.O. CitationJournal : Acta Crystallogr.,Sect.F / Year : 2020Title : Calpain small subunit 1, RNA-binding protein HfqAuthors : Rizkallah, P.J. / Cresser-Brown, J.O. History Deposition Jan 31, 2019 Deposition site : PDBE / Processing site : PDBERevision 1.0 Feb 5, 2020 Provider : repository / Type : Initial releaseRevision 1.1 Jan 24, 2024 Group : Data collection / Database references ... Data collection / Database references / Derived calculations / Refinement description Category : chem_comp_atom / chem_comp_bond ... chem_comp_atom / chem_comp_bond / citation / database_2 / pdbx_initial_refinement_model / pdbx_struct_conn_angle / struct_conn / struct_ncs_dom_lim Item : _citation.year / _database_2.pdbx_DOI ... _citation.year / _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_asym_id / _pdbx_struct_conn_angle.ptnr1_auth_comp_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_asym_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_comp_id / _pdbx_struct_conn_angle.ptnr1_label_seq_id / _pdbx_struct_conn_angle.ptnr2_auth_seq_id / _pdbx_struct_conn_angle.ptnr2_label_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_comp_id / _pdbx_struct_conn_angle.ptnr3_label_seq_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id / _struct_ncs_dom_lim.beg_label_comp_id / _struct_ncs_dom_lim.beg_label_seq_id / _struct_ncs_dom_lim.end_auth_comp_id / _struct_ncs_dom_lim.end_label_asym_id / _struct_ncs_dom_lim.end_label_comp_id / _struct_ncs_dom_lim.end_label_seq_id
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