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Open data
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Basic information
Entry | Database: PDB / ID: 6omi | ||||||
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Title | Crystal structure of the Legionella effector protein MavL | ||||||
![]() | MavL | ||||||
![]() | HYDROLASE / ADP-ribosyltransferase (ART) / macrodomain / Secreted bacterial effector protein | ||||||
Function / homology | BROMIDE ION / Uncharacterized protein![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Cygler, M. / Voth, K. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Crystal Structure of the Legionella Effector protein MavL Authors: Cygler, M. / Voth, K. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 422.8 KB | Display | ![]() |
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PDB format | ![]() | 361.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 44423.336 Da / Num. of mol.: 3 / Fragment: residues 42-435 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Strain: Philadelphia 1 / ATCC 33152 / DSM 7513 / Gene: lpg2526 / Production host: ![]() ![]() #2: Chemical | #3: Water | ChemComp-HOH / | Has ligand of interest | N | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.02 Å3/Da / Density % sol: 59.23 % |
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Crystal grow | Temperature: 293.15 K / Method: vapor diffusion, hanging drop / pH: 6.5 Details: 20% PEG8000, 0.2M Ammonium sulfate, 0.1M MES pH 6.5 |
-Data collection
Diffraction | Mean temperature: 293.15 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS3 S 6M / Detector: PIXEL / Date: Jan 15, 2018 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.993054 Å / Relative weight: 1 |
Reflection | Resolution: 2.643→48.77 Å / Num. obs: 41740 / % possible obs: 99.26 % / Redundancy: 1.998 % / Rmerge(I) obs: 0.078 / Net I/σ(I): 21.53 |
Reflection shell | Resolution: 2.643→2.738 Å / Rmerge(I) obs: 1.387 / Num. unique obs: 4058 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.643→48.77 Å
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Refine LS restraints |
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LS refinement shell |
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Refinement TLS params. | Method: refined / Refine-ID: X-RAY DIFFRACTION
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Refinement TLS group |
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