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Open data
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Basic information
Entry | Database: PDB / ID: 6non | ||||||
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Title | Structure of Cyanthece apo McdA | ||||||
![]() | Cobyrinic acid ac-diamide synthase | ||||||
![]() | DNA BINDING PROTEIN / nonspecific DNA binding protein / Walker box / ParA-like / Carboxysome / McdA / McdB | ||||||
Function / homology | ![]() carbon fixation / nucleoid / Hydrolases; Acting on acid anhydrides; Acting on acid anhydrides to facilitate cellular and subcellular movement / hydrolase activity / DNA binding / ATP binding / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Schumacher, M.A. | ||||||
![]() | ![]() Title: Structures of maintenance of carboxysome distribution Walker-box McdA and McdB adaptor homologs. Authors: Schumacher, M.A. / Henderson, M. / Zhang, H. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 203.3 KB | Display | ![]() |
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PDB format | ![]() | 169.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 791.6 KB | Display | ![]() |
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Full document | ![]() | 797.1 KB | Display | |
Data in XML | ![]() | 20.4 KB | Display | |
Data in CIF | ![]() | 28.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 29325.689 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Chemical | ChemComp-ADP / | #3: Chemical | ChemComp-MG / | #4: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 5.39 Å3/Da / Density % sol: 77.17 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / Details: ammonium sulfate, lithium sulfate |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS3 S 6M / Detector: PIXEL / Date: Apr 2, 2018 |
Radiation | Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.979 Å / Relative weight: 1 |
Reflection | Resolution: 2.68→134.5 Å / Num. obs: 61015 / % possible obs: 80.8 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 4.7 % / Biso Wilson estimate: 57.51 Å2 / CC1/2: 0.997 / Rpim(I) all: 0.045 / Rsym value: 0.07 / Net I/σ(I): 17.6 |
Reflection shell | Resolution: 2.68→275 Å / Redundancy: 3.5 % / Mean I/σ(I) obs: 2.1 / CC1/2: 0.616 / Rpim(I) all: 0.47 / Rsym value: 0.567 |
-Phasing
Phasing | Method: ![]() |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Shrinkage radii: 0.83 Å / VDW probe radii: 1.1 Å / Bsol: 30.912 Å2 / ksol: 0.318 e/Å3 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters |
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Refinement step | Cycle: LAST / Resolution: 2.68→77.676 Å
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Refine LS restraints |
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LS refinement shell |
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