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Open data
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Basic information
| Entry | Database: PDB / ID: 6nk1 | |||||||||
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| Title | EphA2 LBD in complex with bA-WLA-YRPKbio peptide | |||||||||
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Keywords | TRANSFERASE / protein-peptide interaction / kinase / ephrin / eph receptor / drug development / SIGNALING PROTEIN | |||||||||
| Function / homology | Function and homology informationnotochord cell development / notochord formation / blood vessel endothelial cell proliferation involved in sprouting angiogenesis / negative regulation of lymphangiogenesis / lens fiber cell morphogenesis / axial mesoderm formation / cAMP metabolic process / regulation of blood vessel endothelial cell migration / pericyte cell differentiation / ephrin receptor activity ...notochord cell development / notochord formation / blood vessel endothelial cell proliferation involved in sprouting angiogenesis / negative regulation of lymphangiogenesis / lens fiber cell morphogenesis / axial mesoderm formation / cAMP metabolic process / regulation of blood vessel endothelial cell migration / pericyte cell differentiation / ephrin receptor activity / leading edge membrane / negative regulation of chemokine production / response to growth factor / post-anal tail morphogenesis / activation of GTPase activity / bone remodeling / positive regulation of bicellular tight junction assembly / regulation of lamellipodium assembly / branching involved in mammary gland duct morphogenesis / EPH-Ephrin signaling / central nervous system neuron differentiation / RND1 GTPase cycle / RND2 GTPase cycle / RND3 GTPase cycle / tight junction / neural tube development / mammary gland epithelial cell proliferation / RHOV GTPase cycle / growth factor binding / EPHA-mediated growth cone collapse / regulation of cell adhesion mediated by integrin / RHOU GTPase cycle / lamellipodium membrane / RHOG GTPase cycle / EPH-ephrin mediated repulsion of cells / RAC2 GTPase cycle / RAC3 GTPase cycle / regulation of angiogenesis / ephrin receptor signaling pathway / regulation of ERK1 and ERK2 cascade / vasculogenesis / keratinocyte differentiation / RAC1 GTPase cycle / transmembrane receptor protein tyrosine kinase activity / cell surface receptor protein tyrosine kinase signaling pathway / osteoclast differentiation / molecular function activator activity / negative regulation of angiogenesis / skeletal system development / protein localization to plasma membrane / cell chemotaxis / positive regulation of protein localization to plasma membrane / cell motility / receptor protein-tyrosine kinase / ruffle membrane / intrinsic apoptotic signaling pathway in response to DNA damage / osteoblast differentiation / cell migration / lamellipodium / virus receptor activity / angiogenesis / receptor complex / cell adhesion / defense response to Gram-positive bacterium / positive regulation of cell migration / cadherin binding / inflammatory response / focal adhesion / cell surface / ATP binding / plasma membrane Similarity search - Function | |||||||||
| Biological species | Homo sapiens (human)synthetic construct (others) | |||||||||
| Method | X-RAY DIFFRACTION / MOLECULAR REPLACEMENT / molecular replacement / Resolution: 1.55 Å | |||||||||
Authors | Lechtenberg, B.C. / Pasquale, E.B. | |||||||||
| Funding support | United States, 2items
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Citation | Journal: J.Biol.Chem. / Year: 2019Title: Engineering nanomolar peptide ligands that differentially modulate EphA2 receptor signaling. Authors: Gomez-Soler, M. / Petersen Gehring, M. / Lechtenberg, B.C. / Zapata-Mercado, E. / Hristova, K. / Pasquale, E.B. | |||||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 6nk1.cif.gz | 308.4 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb6nk1.ent.gz | 209.8 KB | Display | PDB format |
| PDBx/mmJSON format | 6nk1.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 6nk1_validation.pdf.gz | 476.5 KB | Display | wwPDB validaton report |
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| Full document | 6nk1_full_validation.pdf.gz | 479.1 KB | Display | |
| Data in XML | 6nk1_validation.xml.gz | 21.1 KB | Display | |
| Data in CIF | 6nk1_validation.cif.gz | 31.2 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/nk/6nk1 ftp://data.pdbj.org/pub/pdb/validation_reports/nk/6nk1 | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 6njzSC ![]() 6nk0C ![]() 6nk2C ![]() 6nkpC S: Starting model for refinement C: citing same article ( |
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| Similar structure data |
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Assembly
| Deposited unit | ![]()
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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Components
About Yorodumi




Homo sapiens (human)
X-RAY DIFFRACTION
United States, 2items
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