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Yorodumi- PDB-6nbn: Structure of Aedes aegypti OBP22 in the complex with arachidonic acid -
+Open data
-Basic information
Entry | Database: PDB / ID: 6nbn | ||||||
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Title | Structure of Aedes aegypti OBP22 in the complex with arachidonic acid | ||||||
Components | AAEL005772-PA | ||||||
Keywords | TRANSPORT PROTEIN / Odorant binding protein Chemo-sensory signaling Lipid binding | ||||||
Function / homology | Insect pheromone/odorant binding protein domains. / Pheromone/general odorant binding protein / PBP/GOBP family / Pheromone/general odorant binding protein superfamily / odorant binding / lipid binding / ARACHIDONIC ACID / Odorant binding protein Function and homology information | ||||||
Biological species | Aedes aegypti (yellow fever mosquito) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Jones, D.N. / Wang, J. | ||||||
Funding support | United States, 1items
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Citation | Journal: Sci Rep / Year: 2020 Title: Aedes aegypti Odorant Binding Protein 22 selectively binds fatty acids through a conformational change in its C-terminal tail. Authors: Wang, J. / Murphy, E.J. / Nix, J.C. / Jones, D.N.M. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6nbn.cif.gz | 1.1 MB | Display | PDBx/mmCIF format |
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PDB format | pdb6nbn.ent.gz | 987.7 KB | Display | PDB format |
PDBx/mmJSON format | 6nbn.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/nb/6nbn ftp://data.pdbj.org/pub/pdb/validation_reports/nb/6nbn | HTTPS FTP |
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-Related structure data
Related structure data | 6og0C 6oghC 6oiiC 6omwC 6opbC 6otlC 6p2eC C: citing same article (ref.) |
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Similar structure data | |
Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 14400.319 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Aedes aegypti (yellow fever mosquito) / Tissue: Antennal cDNA / Gene: 5567053, AAEL005772 / Plasmid: PET1a / Production host: ESCHERICHIA COLI BL21(DE3) (bacteria) / References: UniProt: Q1HRL7 |
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#2: Chemical | ChemComp-ACD / |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions | Ionic strength: 20 mM / Ionic strength err: 0.2 / Pressure: 820 mbar / Temperature: 298 K / Temperature err: 1
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-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 3 Details: Structure were determined using the unambiguous assignment protocol in Aria2 using a final total of 2381 restraint of which 1998 were NOE based | ||||||||||||||||||||
NMR representative | Selection criteria: medoid | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: NOE violation energy / Conformers calculated total number: 50 / Conformers submitted total number: 30 |