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Yorodumi- PDB-6mxq: Solution structure of a c-JUN 5' UTR stem-loop associated with sp... -
+Open data
-Basic information
Entry | Database: PDB / ID: 6mxq | ||||||
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Title | Solution structure of a c-JUN 5' UTR stem-loop associated with specialized cap-dependent translation initiation | ||||||
Components | RNA C-JUN TL | ||||||
Keywords | RNA / c-JUN / mRNA / eIF3 / cap-dependent / specialized translation initiation | ||||||
Function / homology | RNA / RNA (> 10) Function and homology information | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Walker, M. / Shortridge, M. / Varani, G. | ||||||
Funding support | United States, 1items
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Citation | Journal: J.Mol.Biol. / Year: 2020 Title: Structure of the RNA Specialized Translation Initiation Element that Recruits eIF3 to the 5'-UTR of c-Jun. Authors: Walker, M.J. / Shortridge, M.D. / Albin, D.D. / Cominsky, L.Y. / Varani, G. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6mxq.cif.gz | 299.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6mxq.ent.gz | 251.7 KB | Display | PDB format |
PDBx/mmJSON format | 6mxq.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/mx/6mxq ftp://data.pdbj.org/pub/pdb/validation_reports/mx/6mxq | HTTPS FTP |
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-Related structure data
Related structure data | 6noaC C: citing same article (ref.) |
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Similar structure data | |
Other databases |
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-Links
-Assembly
Deposited unit |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 15523.181 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) Homo sapiens (human) |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions |
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-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 2 | ||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 200 / Conformers submitted total number: 10 |