+Open data
-Basic information
Entry | Database: PDB / ID: 6m5c | ||||||
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Title | Solution structure of avenatide aV1 | ||||||
Components | avenatide aV1 | ||||||
Keywords | PLANT PROTEIN / cysteine-rich peptide / hevein-like peptide / plant | ||||||
Biological species | Avena sativa (oats) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Tay, S.V. / Wong, K.H. / Huang, J.Y. / Fan, J.S. / Yang, D.W. / Tam, J.P. | ||||||
Funding support | Singapore, 1items
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Citation | Journal: To Be Published Title: Solution structure of avenatide aV1 Authors: Fan, J.S. / Tay, S.V. / Wong, K.H. / Huang, J.Y. / Tam, J.P. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6m5c.cif.gz | 95.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6m5c.ent.gz | 79.3 KB | Display | PDB format |
PDBx/mmJSON format | 6m5c.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6m5c_validation.pdf.gz | 444.3 KB | Display | wwPDB validaton report |
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Full document | 6m5c_full_validation.pdf.gz | 500.1 KB | Display | |
Data in XML | 6m5c_validation.xml.gz | 11.6 KB | Display | |
Data in CIF | 6m5c_validation.cif.gz | 15.8 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/m5/6m5c ftp://data.pdbj.org/pub/pdb/validation_reports/m5/6m5c | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 3741.114 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Avena sativa (oats) |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Type: solution / Contents: 1.0 mM avenatide aV1, 95% H2O/5% D2O / Label: sample_1 / Solvent system: 95% H2O/5% D2O |
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Sample | Conc.: 1.0 mM / Component: avenatide aV1 / Isotopic labeling: natural abundance |
Sample conditions | Ionic strength: 0 mM / Label: condition_1 / pH: 3.5 / PH err: 0.1 / Pressure: 1 atm / Temperature: 298 K / Temperature err: 0.1 |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE / Manufacturer: Bruker / Model: AVANCE / Field strength: 800 MHz |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 4 | |||||||||||||||
NMR representative | Selection criteria: lowest energy | |||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 10 |