登録情報 | データベース: PDB / ID: 6m2v |
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タイトル | Crystal structure of UHRF1 SRA complexed with fully-mCHG DNA. |
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要素 | - DNA (5'-D(*TP*CP*AP*CP*GP*(5CM)P*TP*GP*CP*GP*TP*GP*A)-3')
- E3 ubiquitin-protein ligase UHRF1
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キーワード | DNA BINDING PROTEIN/DNA / 5-methyl-cytosine / complex / epigenetics / DNA BINDING PROTEIN-DNA complex |
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機能・相同性 | 機能・相同性情報
histone H3 ubiquitin ligase activity / hemi-methylated DNA-binding / regulation of epithelial cell proliferation / methyl-CpG binding / negative regulation of gene expression via chromosomal CpG island methylation / mitotic spindle assembly / protein autoubiquitination / cis-regulatory region sequence-specific DNA binding / heterochromatin / methylated histone binding ...histone H3 ubiquitin ligase activity / hemi-methylated DNA-binding / regulation of epithelial cell proliferation / methyl-CpG binding / negative regulation of gene expression via chromosomal CpG island methylation / mitotic spindle assembly / protein autoubiquitination / cis-regulatory region sequence-specific DNA binding / heterochromatin / methylated histone binding / positive regulation of protein metabolic process / replication fork / RING-type E3 ubiquitin transferase / euchromatin / heterochromatin formation / nuclear matrix / ubiquitin protein ligase activity / histone binding / ubiquitin-dependent protein catabolic process / protein ubiquitination / DNA repair / chromatin / negative regulation of transcription by RNA polymerase II / zinc ion binding / nucleoplasm / identical protein binding / nucleus / cytosol類似検索 - 分子機能 : / UHRF1, tandem tudor domain / Tandem tudor domain within UHRF1 / UHRF1/2-like / SRA-YDG / SRA-YDG superfamily / SAD/SRA domain / YDG domain profile. / SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. / PUA-like superfamily ...: / UHRF1, tandem tudor domain / Tandem tudor domain within UHRF1 / UHRF1/2-like / SRA-YDG / SRA-YDG superfamily / SAD/SRA domain / YDG domain profile. / SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. / PUA-like superfamily / Zinc finger, RING-type, conserved site / Zinc finger RING-type signature. / PHD-finger / Ring finger / Zinc finger PHD-type signature. / Zinc finger PHD-type profile. / Zinc finger, PHD-finger / Zinc finger, PHD-type / PHD zinc finger / Zinc finger RING-type profile. / Zinc finger, RING-type / Zinc finger, FYVE/PHD-type / Ubiquitin family / Ubiquitin homologues / Ubiquitin domain profile. / Ubiquitin-like domain / Zinc finger, RING/FYVE/PHD-type / Ubiquitin-like domain superfamily類似検索 - ドメイン・相同性 DNA / DNA (> 10) / E3 ubiquitin-protein ligase UHRF1類似検索 - 構成要素 |
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生物種 | Mus musculus (ハツカネズミ) synthetic construct (人工物) |
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手法 | X線回折 / 分子置換 / 解像度: 3 Å |
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データ登録者 | Abhishek, S. / Nakarakanti, N.K. / Deeksha, W. / Rajakumara, E. |
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資金援助 | インド, 2件 組織 | 認可番号 | 国 |
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Department of Biotechnology (DBT, India) | | インド | Science and Engineering Research Board (SERB) | | インド |
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引用 | ジャーナル: Int.J.Biol.Macromol. / 年: 2021 タイトル: Mechanistic insights into recognition of symmetric methylated cytosines in CpG and non-CpG DNA by UHRF1 SRA. 著者: Abhishek, S. / Nakarakanti, N.K. / Deeksha, W. / Rajakumara, E. |
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履歴 | 登録 | 2020年3月1日 | 登録サイト: PDBJ / 処理サイト: PDBJ |
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改定 1.0 | 2021年1月13日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2021年1月20日 | Group: Database references / カテゴリ: citation Item: _citation.journal_volume / _citation.page_first ..._citation.journal_volume / _citation.page_first / _citation.page_last / _citation.year |
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改定 1.2 | 2023年11月29日 | Group: Data collection / Database references / Refinement description カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession |
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