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Open data
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Basic information
Entry | Database: PDB / ID: 6kdd | ||||||
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Title | endoglucanase | ||||||
![]() | Endoglucanase | ||||||
![]() | HYDROLASE / endoglucanase | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Yu, S. / Liuqing, C. | ||||||
![]() | ![]() Title: crystal structure of an endoglucanase from Fervidobacterium pennivorans DSM9078 Authors: Yu, S. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 81.1 KB | Display | ![]() |
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PDB format | ![]() | 59.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 459 KB | Display | ![]() |
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Full document | ![]() | 462.4 KB | Display | |
Data in XML | ![]() | 15 KB | Display | |
Data in CIF | ![]() | 20.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 37938.586 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Strain: DSM 9078 / Ven5 / Gene: Ferpe_1841 / Production host: ![]() ![]() | ||||||||
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#2: Chemical | #3: Chemical | #4: Chemical | #5: Water | ChemComp-HOH / | Has ligand of interest | N | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.32 Å3/Da / Density % sol: 47.09 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / Details: PEG4000 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 2M / Detector: PIXEL / Date: Jul 24, 2014 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.979 Å / Relative weight: 1 |
Reflection | Resolution: 1.92→50 Å / Num. obs: 27732 / % possible obs: 100 % / Redundancy: 9.6 % / CC1/2: 0.985 / Rpim(I) all: 0.034 / Rrim(I) all: 0.105 / Net I/σ(I): 4 |
Reflection shell | Resolution: 1.92→1.99 Å / Redundancy: 9.7 % / Mean I/σ(I) obs: 2.6 / Num. unique obs: 2715 / CC1/2: 0.967 / Rpim(I) all: 0.149 / Rrim(I) all: 0.474 / Χ2: 1.004 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure: ![]()
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Refinement step | Cycle: LAST / Resolution: 1.92→41.73 Å
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LS refinement shell | Resolution: 1.92→1.99 Å
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