- PDB-6jgf: Crystal structure of Se-Met CadR from P. putida with a 21 residue... -
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Open data
ID or keywords:
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Basic information
Entry
Database: PDB / ID: 6jgf
Title
Crystal structure of Se-Met CadR from P. putida with a 21 residue C-terminal truncation
Components
CadR
Keywords
TRANSCRIPTION / CadR / MerR family / cadmium regulator
Function / homology
Function and homology information
DNA-binding transcription factor activity / positive regulation of DNA-templated transcription / DNA binding / metal ion binding Similarity search - Function
Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelength
Wavelength: 1 Å / Relative weight: 1
Reflection
Resolution: 2.15→50 Å / Num. obs: 7330 / % possible obs: 99.1 % / Redundancy: 20 % / Rsym value: 0.11 / Net I/σ(I): 72.5
Reflection shell
Resolution: 2.15→2.23 Å / Redundancy: 20.8 % / Rmerge(I) obs: 0.8 / Mean I/σ(I) obs: 8.1 / Num. unique obs: 705 / % possible all: 100
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Processing
Software
Name
Version
Classification
REFMAC
5.8.0135
refinement
HKL-2000
datareduction
HKL-2000
datascaling
AutoSol
phasing
Refinement
Method to determine structure: SAD / Resolution: 2.15→30 Å / Cor.coef. Fo:Fc: 0.934 / Cor.coef. Fo:Fc free: 0.912 / SU B: 7.84 / SU ML: 0.191 / Cross valid method: THROUGHOUT / ESU R: 0.306 / ESU R Free: 0.24 / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.28424
382
5.4 %
RANDOM
Rwork
0.23489
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obs
0.23754
6753
96.94 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å