+Open data
-Basic information
Entry | Database: PDB / ID: 6j1q | ||||||
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Title | Crystal structure of Candida Antarctica Lipase B mutant - RS | ||||||
Components | Lipase B | ||||||
Keywords | HYDROLASE / CALB | ||||||
Function / homology | Function and homology information triacylglycerol lipase / triglyceride lipase activity / lipid catabolic process Similarity search - Function | ||||||
Biological species | Pseudozyma antarctica (fungus) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.6 Å | ||||||
Authors | Cen, Y.X. / Zhou, J.H. / Wu, Q. | ||||||
Citation | Journal: J.Am.Chem.Soc. / Year: 2019 Title: Stereodivergent Protein Engineering of a Lipase To Access All Possible Stereoisomers of Chiral Esters with Two Stereocenters. Authors: Xu, J. / Cen, Y. / Singh, W. / Fan, J. / Wu, L. / Lin, X. / Zhou, J. / Huang, M. / Reetz, M.T. / Wu, Q. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6j1q.cif.gz | 274.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6j1q.ent.gz | 219.4 KB | Display | PDB format |
PDBx/mmJSON format | 6j1q.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/j1/6j1q ftp://data.pdbj.org/pub/pdb/validation_reports/j1/6j1q | HTTPS FTP |
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-Related structure data
Related structure data | 6j1pC 6j1rC 6j1sC 6j1tC 1tcaS S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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-Components
-Protein , 1 types, 2 molecules AB
#1: Protein | Mass: 33241.480 Da / Num. of mol.: 2 / Mutation: T57A, A89T, W104A, I189V Source method: isolated from a genetically manipulated source Source: (gene. exp.) Pseudozyma antarctica (fungus) / Production host: Escherichia coli BL21(DE3) (bacteria) / References: UniProt: P41365, triacylglycerol lipase |
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-Non-polymers , 7 types, 593 molecules
#2: Chemical | ChemComp-SO4 / #3: Chemical | ChemComp-EDO / #4: Chemical | #5: Chemical | ChemComp-PEG / #6: Chemical | ChemComp-CL / | #7: Chemical | ChemComp-1PE / | #8: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.03 Å3/Da / Density % sol: 39.28 % |
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Crystal grow | Temperature: 289 K / Method: vapor diffusion, sitting drop Details: 0.2 M ammonium sulfate 0.1 M HEPES 7.0 16% PEG 4000 10% isopropanol |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: SYNCHROTRON / Site: SSRF / Beamline: BL19U1 / Wavelength: 0.97775 Å |
Detector | Type: DECTRIS PILATUS3 6M / Detector: PIXEL / Date: Jun 16, 2017 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97775 Å / Relative weight: 1 |
Reflection | Resolution: 1.6→50 Å / Num. obs: 69637 / % possible obs: 99.7 % / Redundancy: 6.6 % / Rmerge(I) obs: 0.061 / Net I/σ(I): 29.7 |
Reflection shell | Resolution: 1.6→1.63 Å / Rmerge(I) obs: 0.48 / Mean I/σ(I) obs: 2.8 / Num. unique obs: 3322 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT Starting model: 1TCA Resolution: 1.6→46.125 Å / SU ML: 0.14 / Cross valid method: FREE R-VALUE / σ(F): 1.36 / Phase error: 16.81 / Stereochemistry target values: ML
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.6→46.125 Å
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Refine LS restraints |
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LS refinement shell |
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Refinement TLS params. | Method: refined / Origin x: 34.9718 Å / Origin y: 0.4834 Å / Origin z: 2.9038 Å
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Refinement TLS group | Selection details: all |